RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 KSR2Q6VAB6 950 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 MPRIPQ6WCQ1 1025 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 CCDC12Q8WUD4 166 aaPredicted RBP21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 MPHOSPH8Q99549 860 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 BPIFA3Q9BQP9 254 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 RTEL1Q9NZ71 1219 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 PUF60Q9UHX1 559 aaKnown RBP21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 ITSN1Q15811 1721 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 ANKRD65E5RJM6 399 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 SKIDA1Q1XH10 827 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 MCMDC2Q4G0Z9 681 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 PDE11AQ9HCR9 933 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 BABAM1Q9NWV8 329 aa21.66■■□□□ 1.06
CCDC88B-207ENST00000479965 CBFA2T2O43439 604 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 ADKP55263 362 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 GOLGA1Q92805 767 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 EXOC4Q96A65 974 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 RGPD1P0DJD0 1748 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 CRYBG1Q9Y4K1 1723 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 SETD1AO15047 1707 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 PHACTR2O75167 634 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 PFKFB1P16118 471 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 ACTN2P35609 894 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 KCNG4Q8TDN1 519 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 C8orf76Q96K31 380 aa21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 DBNLQ9UJU6 430 aaKnown RBP21.65■■□□□ 1.06
CCDC88B-207ENST00000479965 A0A1W2PQ27 194 aa21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 A0A1W2PQ64 194 aa21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 A0A1W2PQD8 194 aa21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 MAP3K9P80192 1104 aa21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 TOGARAM2Q6ZUX3 1019 aa21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 BAG1Q99933 345 aaPredicted RBP21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 IRX2Q9BZI1 471 aaPredicted RBP21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 EFCC1Q9HA90 598 aa21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 GPHNQ9NQX3 736 aaPredicted RBP21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 FANCLQ9NW38 375 aa21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 CARMIL3Q8ND23 1372 aa21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 SPATA31D1Q6ZQQ2 1576 aa21.64■■□□□ 1.06
CCDC88B-207ENST00000479965 PDIA3P30101 505 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-207ENST00000479965 GTF2A1P52655 376 aaPredicted RBP21.64■■□□□ 1.05
CCDC88B-207ENST00000479965 MRFAP1Q9Y605 127 aa21.64■■□□□ 1.05
CCDC88B-207ENST00000479965 CHD2O14647 1828 aaKnown RBP21.64■■□□□ 1.05
CCDC88B-207ENST00000479965 ARHGAP6O43182 974 aa21.64■■□□□ 1.05
CCDC88B-207ENST00000479965 MYL5Q02045 173 aa21.64■■□□□ 1.05
CCDC88B-207ENST00000479965 WWC2Q6AWC2 1192 aa21.64■■□□□ 1.05
CCDC88B-207ENST00000479965 GOLGA6L1Q8N7Z2 621 aa21.64■■□□□ 1.05
CCDC88B-207ENST00000479965 HMGB1P09429 215 aaKnown RBP21.63■■□□□ 1.05
CCDC88B-207ENST00000479965 ZNF609O15014 1411 aa21.63■■□□□ 1.05
CCDC88B-207ENST00000479965 PNOCQ13519 176 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 FOXR1Q6PIV2 292 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 RABGGTAQ92696 567 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 HSD3B7Q9H2F3 369 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 TOMM22Q9NS69 142 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 FDPSP14324 419 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 TFCP2Q12800 502 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 PAXIP1Q6ZW49 1069 aaPredicted RBP21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 VSTM4Q8IW00 320 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 CHMP4CQ96CF2 233 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 LZTFL1Q9NQ48 299 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 N4BP1O75113 896 aaKnown RBP21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 SYKP43405 635 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 DBNDD2Q9BQY9 259 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 SUGCTQ9HAC7 445 aa21.62■■□□□ 1.05
CCDC88B-207ENST00000479965 NEDD4P46934 1319 aa21.61■■□□□ 1.05
CCDC88B-207ENST00000479965 TXLNAP40222 546 aa21.61■■□□□ 1.05
CCDC88B-207ENST00000479965 NOP2P46087 812 aaKnown RBP21.61■■□□□ 1.05
CCDC88B-207ENST00000479965 RIC3Q7Z5B4 369 aa21.61■■□□□ 1.05
CCDC88B-207ENST00000479965 LINS1Q8NG48 757 aa21.61■■□□□ 1.05
CCDC88B-207ENST00000479965 IKBKBO14920 756 aa21.61■■□□□ 1.05
CCDC88B-207ENST00000479965 OLFM4Q6UX06 510 aa21.61■■□□□ 1.05
CCDC88B-207ENST00000479965 RSRC2Q7L4I2 434 aaKnown RBP21.61■■□□□ 1.05
CCDC88B-207ENST00000479965 MYSM1Q5VVJ2 828 aa21.6■■□□□ 1.05
CCDC88B-207ENST00000479965 CCDC102AQ96A19 550 aa21.6■■□□□ 1.05
CCDC88B-207ENST00000479965 AKAP12Q02952 1782 aa21.6■■□□□ 1.05
CCDC88B-207ENST00000479965 E7EWF7 191 aa21.6■■□□□ 1.05
CCDC88B-207ENST00000479965 CHMP4BP1P59074 171 aa21.6■■□□□ 1.05
CCDC88B-207ENST00000479965 NOM1Q5C9Z4 860 aaKnown RBP21.6■■□□□ 1.05
CCDC88B-207ENST00000479965 JAKMIP3Q5VZ66 844 aa21.6■■□□□ 1.05
CCDC88B-207ENST00000479965 PLEKHA4Q9H4M7 779 aa21.6■■□□□ 1.05
CCDC88B-207ENST00000479965 EPHA10Q5JZY3 1008 aa21.59■■□□□ 1.05
CCDC88B-207ENST00000479965 FAN1Q9Y2M0 1017 aa21.59■■□□□ 1.05
CCDC88B-207ENST00000479965 CACNA1FO60840 1977 aa21.59■■□□□ 1.05
CCDC88B-207ENST00000479965 GOLIM4O00461 696 aa21.59■■□□□ 1.05
CCDC88B-207ENST00000479965 CPLX1O14810 134 aa21.59■■□□□ 1.05
CCDC88B-207ENST00000479965 ATP5JP18859 108 aa21.59■■□□□ 1.05
CCDC88B-207ENST00000479965 SLC26A8Q96RN1 970 aa21.59■■□□□ 1.05
CCDC88B-207ENST00000479965 CCDC151A5D8V7 595 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 WDHD1O75717 1129 aaPredicted RBP21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 HOXB7P09629 217 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 MYL6BP14649 208 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 TNNI3KQ59H18 835 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 TAF7LQ5H9L4 462 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 ZNF530Q6P9A1 599 aaPredicted RBP21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 NEUROD6Q96NK8 337 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 ATG3Q9NT62 314 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 FPGT-TNNI3KV9GXZ4 949 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 MROH7-TTC4A0A0A0MT08 1334 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 YEATS4O95619 227 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 RHOXF2BP0C7M4 288 aa21.58■■□□□ 1.05
CCDC88B-207ENST00000479965 HAND2P61296 217 aa21.58■■□□□ 1.05
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms