RNA–Protein interactions for RNA: ENST00000479625.1

GPNMB-211, Transcript of glycoprotein nmb, humanhuman

TSL 2

Gene GPNMB, Length 788 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPNMB-211ENST00000479625 SPRYD7Q5W111 196 aa12.64□□□□□ -0.39
GPNMB-211ENST00000479625 ANGEL1Q9UNK9 670 aaKnown RBP12.64□□□□□ -0.39
GPNMB-211ENST00000479625 MED23Q9ULK4 1368 aa12.64□□□□□ -0.39
GPNMB-211ENST00000479625 IGF2BP3O00425 579 aaKnown RBP eCLIP12.63□□□□□ -0.39
GPNMB-211ENST00000479625 EN2P19622 333 aaPredicted RBP12.63□□□□□ -0.39
GPNMB-211ENST00000479625 CAP1Q01518 475 aa12.63□□□□□ -0.39
GPNMB-211ENST00000479625 NEUROD2Q15784 382 aa12.63□□□□□ -0.39
GPNMB-211ENST00000479625 PODNQ7Z5L7 613 aa12.63□□□□□ -0.39
GPNMB-211ENST00000479625 ZBTB38Q8NAP3 1195 aaPredicted RBP12.63□□□□□ -0.39
GPNMB-211ENST00000479625 RNF25Q96BH1 459 aaPredicted RBP12.63□□□□□ -0.39
GPNMB-211ENST00000479625 PNNQ9H307 717 aaKnown RBP12.63□□□□□ -0.39
GPNMB-211ENST00000479625 DBF4Q9UBU7 674 aaPredicted RBP12.63□□□□□ -0.39
GPNMB-211ENST00000479625 RANBP2P49792 3224 aaKnown RBP12.62□□□□□ -0.39
GPNMB-211ENST00000479625 CEP290O15078 2479 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 COL1A1P02452 1464 aaPredicted RBP12.62□□□□□ -0.39
GPNMB-211ENST00000479625 CHL1O00533 1208 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 LMOD3Q0VAK6 560 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 CCDC152Q4G0S7 254 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 LDLRAD1Q5T700 205 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 ARMC9Q7Z3E5 817 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 CCDC146Q8IYE0 955 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 PDCD7Q8N8D1 485 aaKnown RBP12.62□□□□□ -0.39
GPNMB-211ENST00000479625 CD99L2Q8TCZ2 262 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 CLMNQ96JQ2 1002 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 MYD88Q99836 296 aa12.62□□□□□ -0.39
GPNMB-211ENST00000479625 ATP2B4P23634 1241 aa12.61□□□□□ -0.39
GPNMB-211ENST00000479625 TRIM28Q13263 835 aaKnown RBP12.61□□□□□ -0.39
GPNMB-211ENST00000479625 INTS3Q68E01 1043 aaKnown RBP12.61□□□□□ -0.39
GPNMB-211ENST00000479625 RIC3Q7Z5B4 369 aa12.61□□□□□ -0.39
GPNMB-211ENST00000479625 ANKRD18AQ8IVF6 992 aa12.61□□□□□ -0.39
GPNMB-211ENST00000479625 OGFOD1Q8N543 542 aa12.61□□□□□ -0.39
GPNMB-211ENST00000479625 PHAXQ9H814 394 aaKnown RBP12.61□□□□□ -0.39
GPNMB-211ENST00000479625 PTPN22Q9Y2R2 807 aa12.61□□□□□ -0.39
GPNMB-211ENST00000479625 TRIOBPQ9H2D6 2365 aa12.61□□□□□ -0.39
GPNMB-211ENST00000479625 ARAP2Q8WZ64 1704 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 MANSC4A6NHS7 340 aaPredicted RBP12.6□□□□□ -0.39
GPNMB-211ENST00000479625 RIOK3O14730 519 aaKnown RBP12.6□□□□□ -0.39
GPNMB-211ENST00000479625 PDE8AO60658 829 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 ALDH1A1P00352 501 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 KLRK1P26718 216 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 TXNRD3Q86VQ6 643 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 APOBEC3FQ8IUX4 373 aaKnown RBP12.6□□□□□ -0.39
GPNMB-211ENST00000479625 KIAA0825Q8IV33 1275 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 SLAIN1Q8ND83 568 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 WNK4Q96J92 1243 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 HYPKQ9NX55 129 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 MYO3BQ8WXR4 1341 aa12.6□□□□□ -0.39
GPNMB-211ENST00000479625 PCCAP05165 728 aaPredicted RBP12.59□□□□□ -0.39
GPNMB-211ENST00000479625 HOXB7P09629 217 aa12.59□□□□□ -0.39
GPNMB-211ENST00000479625 CRHR2Q13324 411 aa12.59□□□□□ -0.39
GPNMB-211ENST00000479625 ARMC5Q96C12 935 aa12.59□□□□□ -0.39
GPNMB-211ENST00000479625 GJA5P36382 358 aa12.58□□□□□ -0.4
GPNMB-211ENST00000479625 CCT4P50991 539 aaKnown RBP12.58□□□□□ -0.4
GPNMB-211ENST00000479625 STRIP1Q5VSL9 837 aa12.58□□□□□ -0.4
GPNMB-211ENST00000479625 DUSP27Q5VZP5 1158 aa12.58□□□□□ -0.4
GPNMB-211ENST00000479625 ERO1AQ96HE7 468 aa12.58□□□□□ -0.4
GPNMB-211ENST00000479625 ZBED3Q96IU2 234 aaPredicted RBP12.58□□□□□ -0.4
GPNMB-211ENST00000479625 CWC25Q9NXE8 425 aaPredicted RBP12.58□□□□□ -0.4
GPNMB-211ENST00000479625 PCDHAC2Q9Y5I4 1007 aa12.58□□□□□ -0.4
GPNMB-211ENST00000479625 COL6A3P12111 3177 aa12.58□□□□□ -0.4
GPNMB-211ENST00000479625 ZBTB48P10074 688 aaPredicted RBP12.57□□□□□ -0.4
GPNMB-211ENST00000479625 CTSWP56202 376 aa12.57□□□□□ -0.4
GPNMB-211ENST00000479625 CCDC191Q8NCU4 936 aa12.57□□□□□ -0.4
GPNMB-211ENST00000479625 SLC10A4Q96EP9 437 aa12.57□□□□□ -0.4
GPNMB-211ENST00000479625 GREM2Q9H772 168 aa12.57□□□□□ -0.4
GPNMB-211ENST00000479625 EFCC1Q9HA90 598 aa12.57□□□□□ -0.4
GPNMB-211ENST00000479625 MINPP1Q9UNW1 487 aa12.57□□□□□ -0.4
GPNMB-211ENST00000479625 AOX1Q06278 1338 aa12.57□□□□□ -0.4
GPNMB-211ENST00000479625 MYCP01106 439 aaPredicted RBP12.56□□□□□ -0.4
GPNMB-211ENST00000479625 HSP90B1P14625 803 aaKnown RBP12.56□□□□□ -0.4
GPNMB-211ENST00000479625 ZNF333Q96JL9 665 aa12.56□□□□□ -0.4
GPNMB-211ENST00000479625 CDC5LQ99459 802 aaKnown RBP12.56□□□□□ -0.4
GPNMB-211ENST00000479625 COA1Q9GZY4 146 aa12.56□□□□□ -0.4
GPNMB-211ENST00000479625 DEFB129Q9H1M3 183 aa12.56□□□□□ -0.4
GPNMB-211ENST00000479625 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.55□□□□□ -0.4
GPNMB-211ENST00000479625 CLRN2A0PK11 232 aa12.55□□□□□ -0.4
GPNMB-211ENST00000479625 INHBEP58166 350 aa12.55□□□□□ -0.4
GPNMB-211ENST00000479625 GTF2IP78347 998 aa12.55□□□□□ -0.4
GPNMB-211ENST00000479625 MAP3K11Q16584 847 aa12.55□□□□□ -0.4
GPNMB-211ENST00000479625 TTLL5Q6EMB2 1281 aa12.55□□□□□ -0.4
GPNMB-211ENST00000479625 FAM163AQ96GL9 167 aaPredicted RBP12.55□□□□□ -0.4
GPNMB-211ENST00000479625 ZFP91Q96JP5 570 aaPredicted RBP12.55□□□□□ -0.4
GPNMB-211ENST00000479625 PTPN18Q99952 460 aa12.55□□□□□ -0.4
GPNMB-211ENST00000479625 MBIPQ9NS73 344 aa12.55□□□□□ -0.4
GPNMB-211ENST00000479625 PTCH2Q9Y6C5 1203 aa12.55□□□□□ -0.4
GPNMB-211ENST00000479625 H0YGN5 161 aa12.54□□□□□ -0.4
GPNMB-211ENST00000479625 ELL2O00472 640 aaPredicted RBP12.54□□□□□ -0.4
GPNMB-211ENST00000479625 SP3Q02447 781 aa12.54□□□□□ -0.4
GPNMB-211ENST00000479625 NBPF12Q5TAG4 269 aaPredicted RBP12.54□□□□□ -0.4
GPNMB-211ENST00000479625 CERS5Q8N5B7 392 aa12.54□□□□□ -0.4
GPNMB-211ENST00000479625 TTLL11Q8NHH1 800 aa12.54□□□□□ -0.4
GPNMB-211ENST00000479625 BSDC1Q9NW68 430 aaPredicted RBP12.54□□□□□ -0.4
GPNMB-211ENST00000479625 POTEMA6NI47 508 aa12.53□□□□□ -0.4
GPNMB-211ENST00000479625 F8W031 263 aaPredicted RBP12.53□□□□□ -0.4
GPNMB-211ENST00000479625 ECM2O94769 699 aaPredicted RBP12.53□□□□□ -0.4
GPNMB-211ENST00000479625 DLGAP5Q15398 846 aa12.53□□□□□ -0.4
GPNMB-211ENST00000479625 SLC9C1Q4G0N8 1177 aa12.53□□□□□ -0.4
GPNMB-211ENST00000479625 EFCAB3Q8N7B9 438 aa12.53□□□□□ -0.4
GPNMB-211ENST00000479625 METTL22Q9BUU2 404 aaPredicted RBP12.53□□□□□ -0.4
GPNMB-211ENST00000479625 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms