RNA–Protein interactions for RNA: ENST00000479003.5

CHKB-208, Transcript of choline kinase beta, human

TSL 2

Gene CHKB, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHKB-208	ENST00000479003	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	32.58	■■■□□ 2.81
CHKB-208	ENST00000479003	CCDC39	Q9UFE4	941 aa		32.57	■■■□□ 2.81
CHKB-208	ENST00000479003	COL4A1	P02462	1669 aa		32.57	■■■□□ 2.8
CHKB-208	ENST00000479003		A0A1B0GUL7	405 aa		32.57	■■■□□ 2.8
CHKB-208	ENST00000479003	NFIX	Q14938	502 aa		32.57	■■■□□ 2.8
CHKB-208	ENST00000479003	TICAM2	Q86XR7	235 aa		32.57	■■■□□ 2.8
CHKB-208	ENST00000479003	NEK1	Q96PY6	1258 aa		32.57	■■■□□ 2.8
CHKB-208	ENST00000479003	GYS1	P13807	737 aa		32.56	■■■□□ 2.8
CHKB-208	ENST00000479003	DDX46	Q7L014	1031 aa	Known RBP	32.56	■■■□□ 2.8
CHKB-208	ENST00000479003	CCDC24	Q8N4L8	307 aa		32.56	■■■□□ 2.8
CHKB-208	ENST00000479003	SEC62	Q99442	399 aa	Known RBP	32.56	■■■□□ 2.8
CHKB-208	ENST00000479003	RTL9	Q8NET4	1388 aa		32.56	■■■□□ 2.8
CHKB-208	ENST00000479003	GLIPR1L2	Q4G1C9	344 aa		32.56	■■■□□ 2.8
CHKB-208	ENST00000479003	CCDC129	Q6ZRS4	1044 aa		32.56	■■■□□ 2.8
CHKB-208	ENST00000479003	CHGB	P05060	677 aa		32.55	■■■□□ 2.8
CHKB-208	ENST00000479003	METTL24	Q5JXM2	366 aa		32.55	■■■□□ 2.8
CHKB-208	ENST00000479003	CDC37L1	Q7L3B6	337 aa		32.55	■■■□□ 2.8
CHKB-208	ENST00000479003	ZNF500	O60304	480 aa	Predicted RBP	32.54	■■■□□ 2.8
CHKB-208	ENST00000479003	SLC10A5	Q5PT55	438 aa		32.54	■■■□□ 2.8
CHKB-208	ENST00000479003	ZKSCAN5	Q9Y2L8	839 aa		32.54	■■■□□ 2.8
CHKB-208	ENST00000479003	CARMIL3	Q8ND23	1372 aa		32.54	■■■□□ 2.8
CHKB-208	ENST00000479003	MCM5	P33992	734 aa		32.54	■■■□□ 2.8
CHKB-208	ENST00000479003	TPTE2	Q6XPS3	522 aa		32.54	■■■□□ 2.8
CHKB-208	ENST00000479003	SPEF2	Q9C093	1822 aa		32.53	■■■□□ 2.8
CHKB-208	ENST00000479003	AKT1S1	Q96B36	256 aa		32.53	■■■□□ 2.8
CHKB-208	ENST00000479003	TFCP2L1	Q9NZI6	479 aa		32.53	■■■□□ 2.8
CHKB-208	ENST00000479003	LAMA4	Q16363	1823 aa		32.53	■■■□□ 2.8
CHKB-208	ENST00000479003	KRT85	P78386	507 aa		32.53	■■■□□ 2.8
CHKB-208	ENST00000479003	VGLL2	Q8N8G2	317 aa		32.53	■■■□□ 2.8
CHKB-208	ENST00000479003	CYP21A2	P08686	494 aa		32.52	■■■□□ 2.8
CHKB-208	ENST00000479003	SF3B3	Q15393	1217 aa	Known RBP	32.51	■■■□□ 2.8
CHKB-208	ENST00000479003	HELLS	Q9NRZ9	838 aa		32.51	■■■□□ 2.8
CHKB-208	ENST00000479003	PAG1	Q9NWQ8	432 aa		32.51	■■■□□ 2.8
CHKB-208	ENST00000479003	RGPD3	A6NKT7	1758 aa	Predicted RBP	32.51	■■■□□ 2.8
CHKB-208	ENST00000479003	RGPD4	Q7Z3J3	1758 aa		32.51	■■■□□ 2.8
CHKB-208	ENST00000479003	ELP1	O95163	1332 aa		32.51	■■■□□ 2.8
CHKB-208	ENST00000479003	OFD1	O75665	1012 aa		32.51	■■■□□ 2.79
CHKB-208	ENST00000479003	GTF3C6	Q969F1	213 aa		32.51	■■■□□ 2.79
CHKB-208	ENST00000479003	FUCA2	Q9BTY2	467 aa		32.51	■■■□□ 2.79
CHKB-208	ENST00000479003	AKAP2	Q9Y2D5	859 aa		32.51	■■■□□ 2.79
CHKB-208	ENST00000479003	HMGB2	P26583	209 aa	Known RBP	32.5	■■■□□ 2.79
CHKB-208	ENST00000479003	TAF1	P21675	1872 aa		32.5	■■■□□ 2.79
CHKB-208	ENST00000479003	ADORA1	P30542	326 aa		32.5	■■■□□ 2.79
CHKB-208	ENST00000479003	TPRN	Q4KMQ1	711 aa		32.5	■■■□□ 2.79
CHKB-208	ENST00000479003	MPHOSPH8	Q99549	860 aa		32.5	■■■□□ 2.79
CHKB-208	ENST00000479003	STK3	Q13188	491 aa		32.49	■■■□□ 2.79
CHKB-208	ENST00000479003	TTC6	Q86TZ1	520 aa		32.49	■■■□□ 2.79
CHKB-208	ENST00000479003	GOLIM4	O00461	696 aa		32.48	■■■□□ 2.79
CHKB-208	ENST00000479003		Q6ZUG5	572 aa		32.48	■■■□□ 2.79
CHKB-208	ENST00000479003	FERMT3	Q86UX7	667 aa		32.48	■■■□□ 2.79
CHKB-208	ENST00000479003	TNRC6C	Q9HCJ0	1690 aa	Known RBP	32.48	■■■□□ 2.79
CHKB-208	ENST00000479003	NPHP1	O15259	732 aa		32.47	■■■□□ 2.79
CHKB-208	ENST00000479003	ATP2B3	Q16720	1220 aa		32.47	■■■□□ 2.79
CHKB-208	ENST00000479003	HELB	Q8NG08	1087 aa	Predicted RBP	32.47	■■■□□ 2.79
CHKB-208	ENST00000479003	XAGE2	Q96GT9	111 aa		32.47	■■■□□ 2.79
CHKB-208	ENST00000479003	DSCC1	Q9BVC3	393 aa		32.47	■■■□□ 2.79
CHKB-208	ENST00000479003	PDE8B	O95263	885 aa		32.47	■■■□□ 2.79
CHKB-208	ENST00000479003	IGHMBP2	P38935	993 aa	Known RBP	32.47	■■■□□ 2.79
CHKB-208	ENST00000479003	ZMYM1	Q5SVZ6	1142 aa		32.47	■■■□□ 2.79
CHKB-208	ENST00000479003	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	32.46	■■■□□ 2.79
CHKB-208	ENST00000479003	NLRP3	Q96P20	1036 aa		32.46	■■■□□ 2.79
CHKB-208	ENST00000479003	MROH5	Q6ZUA9	1318 aa		32.46	■■■□□ 2.79
CHKB-208	ENST00000479003	HMGB1	P09429	215 aa	Known RBP	32.45	■■■□□ 2.78
CHKB-208	ENST00000479003	GIMAP6	Q6P9H5	292 aa		32.45	■■■□□ 2.78
CHKB-208	ENST00000479003	COL23A1	Q86Y22	540 aa	Predicted RBP	32.45	■■■□□ 2.78
CHKB-208	ENST00000479003	CNBD1	Q8NA66	436 aa		32.45	■■■□□ 2.78
CHKB-208	ENST00000479003	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	32.45	■■■□□ 2.78
CHKB-208	ENST00000479003	CDC5L	Q99459	802 aa	Known RBP	32.45	■■■□□ 2.78
CHKB-208	ENST00000479003	STOX1	Q6ZVD7	989 aa		32.44	■■■□□ 2.78
CHKB-208	ENST00000479003	TM4SF1	P30408	202 aa		32.44	■■■□□ 2.78
CHKB-208	ENST00000479003	EN1	Q05925	392 aa	Predicted RBP	32.44	■■■□□ 2.78
CHKB-208	ENST00000479003	SCAND2P	Q9GZW5	306 aa	Predicted RBP	32.44	■■■□□ 2.78
CHKB-208	ENST00000479003	EZH2	Q15910	746 aa	Known RBP	32.43	■■■□□ 2.78
CHKB-208	ENST00000479003	FAM173B	Q6P4H8	233 aa		32.43	■■■□□ 2.78
CHKB-208	ENST00000479003	IFIT1	P09914	478 aa	Known RBP	32.42	■■■□□ 2.78
CHKB-208	ENST00000479003	PRR5L	Q6MZQ0	368 aa		32.42	■■■□□ 2.78
CHKB-208	ENST00000479003	JAK2	O60674	1132 aa		32.42	■■■□□ 2.78
CHKB-208	ENST00000479003	GORAB	Q5T7V8	394 aa		32.41	■■■□□ 2.78
CHKB-208	ENST00000479003	ANKRD18A	Q8IVF6	992 aa		32.41	■■■□□ 2.78
CHKB-208	ENST00000479003	CELF1	Q92879	486 aa	Known RBP	32.41	■■■□□ 2.78
CHKB-208	ENST00000479003	CAMKK2	Q96RR4	588 aa		32.41	■■■□□ 2.78
CHKB-208	ENST00000479003	SNAP23	O00161	211 aa		32.41	■■■□□ 2.78
CHKB-208	ENST00000479003	DDR1	Q08345	913 aa		32.41	■■■□□ 2.78
CHKB-208	ENST00000479003	DHX32	Q7L7V1	743 aa	Known RBP	32.41	■■■□□ 2.78
CHKB-208	ENST00000479003	USP25	Q9UHP3	1055 aa		32.41	■■■□□ 2.78
CHKB-208	ENST00000479003	RNF113A	O15541	343 aa	Known RBP	32.4	■■■□□ 2.78
CHKB-208	ENST00000479003	PTMA	P06454	111 aa	Known RBP	32.4	■■■□□ 2.78
CHKB-208	ENST00000479003	PUM3	Q15397	648 aa	Known RBP	32.4	■■■□□ 2.78
CHKB-208	ENST00000479003	SERPINB2	P05120	415 aa		32.39	■■■□□ 2.78
CHKB-208	ENST00000479003	SLFNL1	Q499Z3	407 aa		32.39	■■■□□ 2.78
CHKB-208	ENST00000479003	BRF1	Q92994	677 aa		32.39	■■■□□ 2.78
CHKB-208	ENST00000479003	LLPH	Q9BRT6	129 aa	Known RBP	32.39	■■■□□ 2.78
CHKB-208	ENST00000479003	PFKFB2	O60825	505 aa		32.39	■■■□□ 2.78
CHKB-208	ENST00000479003	FGFR2	P21802	821 aa		32.39	■■■□□ 2.78
CHKB-208	ENST00000479003	CCDC158	Q5M9N0	1113 aa		32.39	■■■□□ 2.78
CHKB-208	ENST00000479003	SMARCC2	Q8TAQ2	1214 aa		32.39	■■■□□ 2.78
CHKB-208	ENST00000479003	PNPLA7	Q6ZV29	1317 aa		32.38	■■■□□ 2.77
CHKB-208	ENST00000479003	TPM2	P07951	284 aa		32.38	■■■□□ 2.77
CHKB-208	ENST00000479003	CHRND	Q07001	517 aa		32.38	■■■□□ 2.77
CHKB-208	ENST00000479003	MAST3	O60307	1309 aa		32.38	■■■□□ 2.77

Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms