RNA–Protein interactions for RNA: ENST00000478840.1

UPF3B-203, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3B, Length 748 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-203ENST00000478840 EFR3BQ9Y2G0 817 aa7.74□□□□□ -1.17
UPF3B-203ENST00000478840 F6X3S4 739 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 TRPA1O75762 1119 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 TFE3P19532 575 aaPredicted RBP7.73□□□□□ -1.17
UPF3B-203ENST00000478840 FAAP100Q0VG06 881 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 SERINC3Q13530 473 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 MAP3K11Q16584 847 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 TTBK2Q6IQ55 1244 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 RAB44Q7Z6P3 723 aaPredicted RBP7.73□□□□□ -1.17
UPF3B-203ENST00000478840 SLITRK4Q8IW52 837 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 MKL1Q969V6 931 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 LRRC3Q9BY71 257 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 RASSF4Q9H2L5 321 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 ZSWIM4Q9H7M6 989 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 ZNF408Q9H9D4 720 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 TBX22Q9Y458 520 aa7.73□□□□□ -1.17
UPF3B-203ENST00000478840 SSBP05455 408 aaKnown RBP eCLIP7.72□□□□□ -1.17
UPF3B-203ENST00000478840 ZNF746Q6NUN9 644 aaPredicted RBP7.72□□□□□ -1.17
UPF3B-203ENST00000478840 FAM196AQ6ZSG2 479 aa7.72□□□□□ -1.17
UPF3B-203ENST00000478840 TRIM42Q8IWZ5 723 aa7.72□□□□□ -1.17
UPF3B-203ENST00000478840 GTPBP3Q969Y2 492 aaKnown RBP7.72□□□□□ -1.17
UPF3B-203ENST00000478840 TMEM39AQ9NV64 488 aa7.72□□□□□ -1.17
UPF3B-203ENST00000478840 SIN3BO75182 1162 aa7.71□□□□□ -1.18
UPF3B-203ENST00000478840 PAGE1O75459 146 aa7.71□□□□□ -1.18
UPF3B-203ENST00000478840 ZNF468Q5VIY5 522 aaPredicted RBP7.71□□□□□ -1.18
UPF3B-203ENST00000478840 GOLM1Q8NBJ4 401 aa7.71□□□□□ -1.18
UPF3B-203ENST00000478840 POP1Q99575 1024 aaKnown RBP7.71□□□□□ -1.18
UPF3B-203ENST00000478840 AVENQ9NQS1 362 aaPredicted RBP7.71□□□□□ -1.18
UPF3B-203ENST00000478840 DNAJB12Q9NXW2 375 aaKnown RBP7.71□□□□□ -1.18
UPF3B-203ENST00000478840 UBP1Q9NZI7 540 aa7.71□□□□□ -1.18
UPF3B-203ENST00000478840 J3QW42 95 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 CRKP46108 304 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 ATP11AP98196 1134 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 CTBSQ01459 385 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 FAM160A1Q05DH4 1040 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 APOBRQ0VD83 1088 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 NFE2L2Q16236 605 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 SNAP47Q5SQN1 464 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 PCNX4Q63HM2 1172 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 ASAP3Q8TDY4 903 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 BSNDQ8WZ55 320 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 TNFRSF25Q93038 417 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 MUC3BQ9H195 1237 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 RBSNQ9H1K0 784 aa7.7□□□□□ -1.18
UPF3B-203ENST00000478840 CLEC4MQ9H2X3 399 aaPredicted RBP7.7□□□□□ -1.18
UPF3B-203ENST00000478840 KLF4O43474 513 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 B3GALT4O96024 378 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 GHRHP01286 108 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 PPP2R3AQ06190 1150 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 FOXR1Q6PIV2 292 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 SYT9Q86SS6 491 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 NKD1Q969G9 470 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 TRERF1Q96PN7 1200 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 ADAM19Q9H013 955 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 SIRPGQ9P1W8 387 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 SOX13Q9UN79 622 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 SAMM50Q9Y512 469 aa7.69□□□□□ -1.18
UPF3B-203ENST00000478840 FAM221AA4D161 298 aa7.68□□□□□ -1.18
UPF3B-203ENST00000478840 SMNDC1O75940 238 aaKnown RBP eCLIP7.68□□□□□ -1.18
UPF3B-203ENST00000478840 NCLP19338 710 aaKnown RBP7.68□□□□□ -1.18
UPF3B-203ENST00000478840 BMP6P22004 513 aa7.68□□□□□ -1.18
UPF3B-203ENST00000478840 ETFBP38117 255 aa7.68□□□□□ -1.18
UPF3B-203ENST00000478840 MLLT1Q03111 559 aaPredicted RBP7.68□□□□□ -1.18
UPF3B-203ENST00000478840 SCARA3Q6AZY7 606 aa7.68□□□□□ -1.18
UPF3B-203ENST00000478840 SDE2Q6IQ49 451 aa7.68□□□□□ -1.18
UPF3B-203ENST00000478840 GATAD2BQ8WXI9 593 aa7.68□□□□□ -1.18
UPF3B-203ENST00000478840 NANOS1Q8WY41 292 aaKnown RBP7.68□□□□□ -1.18
UPF3B-203ENST00000478840 GPN3Q9UHW5 284 aaPredicted RBP7.68□□□□□ -1.18
UPF3B-203ENST00000478840 PRR12Q9ULL5 1215 aa7.68□□□□□ -1.18
UPF3B-203ENST00000478840 CYP8B1Q9UNU6 501 aa7.68□□□□□ -1.18
UPF3B-203ENST00000478840 CDK11AQ9UQ88 783 aaPredicted RBP7.68□□□□□ -1.18
UPF3B-203ENST00000478840 K7ELQ4 463 aaPredicted RBP7.67□□□□□ -1.18
UPF3B-203ENST00000478840 C2CD2LO14523 706 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 NME2P22392 152 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 RAB33AQ14088 237 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 MPP2Q14168 576 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 HFE2Q6ZVN8 426 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 ANKS3Q6ZW76 656 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 VN1R5Q7Z5H4 357 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 SHDQ96IW2 340 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 MDFIQ99750 246 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 SRRTQ9BXP5 876 aaKnown RBP7.67□□□□□ -1.18
UPF3B-203ENST00000478840 PRKAG3Q9UGI9 489 aa7.67□□□□□ -1.18
UPF3B-203ENST00000478840 ADARB2-AS1A8MUL3 147 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 F13A1P00488 732 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 PCDH1Q08174 1060 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 BMS1Q14692 1282 aaKnown RBP7.66□□□□□ -1.18
UPF3B-203ENST00000478840 ZNF423Q2M1K9 1284 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 LCE2CQ5TA81 110 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 RASIP1Q5U651 963 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 BNC2Q6ZN30 1099 aaPredicted RBP7.66□□□□□ -1.18
UPF3B-203ENST00000478840 LRP10Q7Z4F1 713 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 NLGN1Q8N2Q7 840 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 TTC9Q92623 222 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 UBE2OQ9C0C9 1292 aaKnown RBP7.66□□□□□ -1.18
UPF3B-203ENST00000478840 MIR1-1HGQ9H1L0 117 aa7.66□□□□□ -1.18
UPF3B-203ENST00000478840 CILPO75339 1184 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 PTPRAP18433 802 aa7.65□□□□□ -1.18
UPF3B-203ENST00000478840 EIF2AK2P19525 551 aaKnown RBP7.65□□□□□ -1.18
UPF3B-203ENST00000478840 LRRC14Q15048 493 aa7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 136.1 ms