RNA–Protein interactions for RNA: ENST00000472308.1

SHH-205, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 504 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-205ENST00000472308 NBPF12Q5TAG4 269 aaPredicted RBP23.69■■□□□ 1.38
SHH-205ENST00000472308 CD209Q9NNX6 404 aa23.69■■□□□ 1.38
SHH-205ENST00000472308 CLRN2A0PK11 232 aa23.68■■□□□ 1.38
SHH-205ENST00000472308 TESPA1A2RU30 521 aaPredicted RBP23.68■■□□□ 1.38
SHH-205ENST00000472308 NEURL1BA8MQ27 555 aa23.68■■□□□ 1.38
SHH-205ENST00000472308 GNAI1P63096 354 aa23.68■■□□□ 1.38
SHH-205ENST00000472308 SP3Q02447 781 aa23.68■■□□□ 1.38
SHH-205ENST00000472308 UBE3BQ7Z3V4 1068 aa23.68■■□□□ 1.38
SHH-205ENST00000472308 ZNF333Q96JL9 665 aa23.68■■□□□ 1.38
SHH-205ENST00000472308 ANKRD2Q9GZV1 360 aa23.68■■□□□ 1.38
SHH-205ENST00000472308 COLQQ9Y215 455 aaPredicted RBP23.68■■□□□ 1.38
SHH-205ENST00000472308 RANBP2P49792 3224 aaKnown RBP23.68■■□□□ 1.38
SHH-205ENST00000472308 OTOFQ9HC10 1997 aa23.67■■□□□ 1.38
SHH-205ENST00000472308 SPDYE2BA6NHP3 402 aa23.67■■□□□ 1.38
SHH-205ENST00000472308 H7C1W4 665 aa23.67■■□□□ 1.38
SHH-205ENST00000472308 SNAP23O00161 211 aa23.67■■□□□ 1.38
SHH-205ENST00000472308 USP2O75604 605 aaPredicted RBP23.67■■□□□ 1.38
SHH-205ENST00000472308 SPDYE6P0CI01 402 aa23.67■■□□□ 1.38
SHH-205ENST00000472308 ITGA6P23229 1130 aa23.67■■□□□ 1.38
SHH-205ENST00000472308 CCDC30Q5VVM6 783 aa23.67■■□□□ 1.38
SHH-205ENST00000472308 TSPYL6Q8N831 410 aa23.66■■□□□ 1.38
SHH-205ENST00000472308 PRMT6Q96LA8 375 aaPredicted RBP23.66■■□□□ 1.38
SHH-205ENST00000472308 CEP290O15078 2479 aa23.65■■□□□ 1.38
SHH-205ENST00000472308 CHRNDQ07001 517 aa23.65■■□□□ 1.38
SHH-205ENST00000472308 SUPT20HL1Q3ZLR7 823 aa23.65■■□□□ 1.38
SHH-205ENST00000472308 CFAP100Q494V2 611 aa23.65■■□□□ 1.38
SHH-205ENST00000472308 OTUD7BQ6GQQ9 843 aa23.65■■□□□ 1.38
SHH-205ENST00000472308 PLA2G12BQ9BX93 195 aa23.65■■□□□ 1.38
SHH-205ENST00000472308 F8W031 263 aaPredicted RBP23.64■■□□□ 1.37
SHH-205ENST00000472308 IREB2P48200 963 aaKnown RBP23.64■■□□□ 1.37
SHH-205ENST00000472308 VEZTQ9HBM0 779 aa23.64■■□□□ 1.37
SHH-205ENST00000472308 TRIOBPQ9H2D6 2365 aa23.63■■□□□ 1.37
SHH-205ENST00000472308 KCNJ4P48050 445 aa23.63■■□□□ 1.37
SHH-205ENST00000472308 CASP7P55210 303 aa23.63■■□□□ 1.37
SHH-205ENST00000472308 NEXNQ0ZGT2 675 aa23.63■■□□□ 1.37
SHH-205ENST00000472308 C15orf52Q6ZUT6 534 aaKnown RBP23.63■■□□□ 1.37
SHH-205ENST00000472308 ANKRD13AQ8IZ07 590 aa23.63■■□□□ 1.37
SHH-205ENST00000472308 MS4A4AQ96JQ5 239 aa23.63■■□□□ 1.37
SHH-205ENST00000472308 MPHOSPH8Q99549 860 aa23.63■■□□□ 1.37
SHH-205ENST00000472308 PTCH2Q9Y6C5 1203 aa23.63■■□□□ 1.37
SHH-205ENST00000472308 A0A1B0GUL6 1792 aa23.63■■□□□ 1.37
SHH-205ENST00000472308 APAF1O14727 1248 aa23.62■■□□□ 1.37
SHH-205ENST00000472308 CSF1RP07333 972 aa23.62■■□□□ 1.37
SHH-205ENST00000472308 RASA3Q14644 834 aa23.62■■□□□ 1.37
SHH-205ENST00000472308 OPTNQ96CV9 577 aa23.62■■□□□ 1.37
SHH-205ENST00000472308 TMEM106CQ9BVX2 250 aa23.62■■□□□ 1.37
SHH-205ENST00000472308 ELP3Q9H9T3 547 aa23.62■■□□□ 1.37
SHH-205ENST00000472308 MYO1BO43795 1136 aa23.61■■□□□ 1.37
SHH-205ENST00000472308 IL1R1P14778 569 aa23.61■■□□□ 1.37
SHH-205ENST00000472308 CALD1Q05682 793 aaKnown RBP23.61■■□□□ 1.37
SHH-205ENST00000472308 G2E3Q7L622 706 aa23.61■■□□□ 1.37
SHH-205ENST00000472308 BRI3BPQ8WY22 251 aa23.61■■□□□ 1.37
SHH-205ENST00000472308 TAF5LO75529 589 aa23.6■■□□□ 1.37
SHH-205ENST00000472308 GCKRQ14397 625 aa23.6■■□□□ 1.37
SHH-205ENST00000472308 SLC9C1Q4G0N8 1177 aa23.6■■□□□ 1.37
SHH-205ENST00000472308 CDAN1Q8IWY9 1227 aa23.6■■□□□ 1.37
SHH-205ENST00000472308 CNKSR2Q8WXI2 1034 aa23.6■■□□□ 1.37
SHH-205ENST00000472308 JAG2Q9Y219 1238 aa23.6■■□□□ 1.37
SHH-205ENST00000472308 FKBP1AP62942 108 aaKnown RBP23.59■■□□□ 1.37
SHH-205ENST00000472308 HELBQ8NG08 1087 aaPredicted RBP23.59■■□□□ 1.37
SHH-205ENST00000472308 H0YGN5 161 aa23.58■■□□□ 1.37
SHH-205ENST00000472308 PPP1R3FQ6ZSY5 799 aaPredicted RBP23.58■■□□□ 1.37
SHH-205ENST00000472308 OTUD5Q96G74 571 aa23.58■■□□□ 1.37
SHH-205ENST00000472308 CHMP4AQ9BY43 222 aa23.58■■□□□ 1.37
SHH-205ENST00000472308 TEPSINQ96N21 525 aa23.57■■□□□ 1.36
SHH-205ENST00000472308 ZSWIM8A7E2V4 1837 aa23.56■■□□□ 1.36
SHH-205ENST00000472308 TAF1CQ15572 869 aaPredicted RBP23.56■■□□□ 1.36
SHH-205ENST00000472308 SPDYE2Q495Y8 402 aa23.56■■□□□ 1.36
SHH-205ENST00000472308 ZNF804AQ7Z570 1209 aa23.56■■□□□ 1.36
SHH-205ENST00000472308 NBPF11Q86T75 865 aa23.56■■□□□ 1.36
SHH-205ENST00000472308 FAM43AQ8N2R8 423 aa23.56■■□□□ 1.36
SHH-205ENST00000472308 CCL15-CCL14A0A0B4J2E2 113 aa23.55■■□□□ 1.36
SHH-205ENST00000472308 MYCP01106 439 aaPredicted RBP23.55■■□□□ 1.36
SHH-205ENST00000472308 VGLL4Q14135 290 aa23.55■■□□□ 1.36
SHH-205ENST00000472308 CCL15Q16663 113 aa23.55■■□□□ 1.36
SHH-205ENST00000472308 SLC4A8Q2Y0W8 1093 aa23.55■■□□□ 1.36
SHH-205ENST00000472308 TSR2Q969E8 191 aaKnown RBP23.55■■□□□ 1.36
SHH-205ENST00000472308 STK31Q9BXU1 1019 aa23.55■■□□□ 1.36
SHH-205ENST00000472308 ANKRD18BA2A2Z9 1011 aa23.54■■□□□ 1.36
SHH-205ENST00000472308 RBM5P52756 815 aaKnown RBP eCLIP23.54■■□□□ 1.36
SHH-205ENST00000472308 SH3TC2Q8TF17 1288 aa23.54■■□□□ 1.36
SHH-205ENST00000472308 ARHGAP39Q9C0H5 1083 aa23.54■■□□□ 1.36
SHH-205ENST00000472308 ZFYVE28Q9HCC9 887 aa23.54■■□□□ 1.36
SHH-205ENST00000472308 ZNF70Q9UC06 446 aaPredicted RBP23.54■■□□□ 1.36
SHH-205ENST00000472308 GTF2A2P52657 109 aa23.52■■□□□ 1.36
SHH-205ENST00000472308 TNFAIP1Q13829 316 aa23.52■■□□□ 1.36
SHH-205ENST00000472308 ARHGEF6Q15052 776 aa23.52■■□□□ 1.36
SHH-205ENST00000472308 DDX55Q8NHQ9 600 aaKnown RBP eCLIP23.52■■□□□ 1.36
SHH-205ENST00000472308 TDRD3Q9H7E2 651 aaKnown RBP23.52■■□□□ 1.36
SHH-205ENST00000472308 ARAP2Q8WZ64 1704 aa23.52■■□□□ 1.36
SHH-205ENST00000472308 FAM205AQ6ZU69 1335 aa23.52■■□□□ 1.36
SHH-205ENST00000472308 SLC4A2P04920 1241 aa23.51■■□□□ 1.35
SHH-205ENST00000472308 FOXO4P98177 505 aa23.51■■□□□ 1.35
SHH-205ENST00000472308 DDX10Q13206 875 aaKnown RBP23.51■■□□□ 1.35
SHH-205ENST00000472308 TMEM39BQ9GZU3 492 aa23.51■■□□□ 1.35
SHH-205ENST00000472308 FLIIQ13045 1269 aa23.5■■□□□ 1.35
SHH-205ENST00000472308 CHRDL2Q6WN34 429 aa23.5■■□□□ 1.35
SHH-205ENST00000472308 LINS1Q8NG48 757 aa23.5■■□□□ 1.35
SHH-205ENST00000472308 SHISA4Q96DD7 197 aa23.5■■□□□ 1.35
SHH-205ENST00000472308 MYH16Q9H6N6 1097 aa23.5■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms