RNA–Protein interactions for RNA: ENST00000471701.1

PRPF40A-207, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 293 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-207ENST00000471701 SSTR4P31391 388 aa6.94□□□□□ -1.3
PRPF40A-207ENST00000471701 ZNF211Q13398 564 aaPredicted RBP6.94□□□□□ -1.3
PRPF40A-207ENST00000471701 FDX2Q6P4F2 183 aa6.94□□□□□ -1.3
PRPF40A-207ENST00000471701 CLEC10AQ8IUN9 316 aa6.94□□□□□ -1.3
PRPF40A-207ENST00000471701 MYRFLQ96LU7 910 aa6.94□□□□□ -1.3
PRPF40A-207ENST00000471701 BRPF3Q9ULD4 1205 aa6.94□□□□□ -1.3
PRPF40A-207ENST00000471701 USTQ9Y2C2 406 aa6.94□□□□□ -1.3
PRPF40A-207ENST00000471701 BMP3P12645 472 aa6.93□□□□□ -1.3
PRPF40A-207ENST00000471701 NUTM2GQ5VZR2 741 aa6.93□□□□□ -1.3
PRPF40A-207ENST00000471701 TRIM42Q8IWZ5 723 aa6.93□□□□□ -1.3
PRPF40A-207ENST00000471701 EGFL7Q9UHF1 273 aa6.93□□□□□ -1.3
PRPF40A-207ENST00000471701 MEGF11A6BM72 1044 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 ICMTO60725 284 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 COBLO75128 1261 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 NFIAQ12857 509 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 RNF43Q68DV7 783 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 VN1R5Q7Z5H4 357 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 FAM20CQ8IXL6 584 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 GJD3Q8N144 294 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 C12orf50Q8NA57 414 aaPredicted RBP6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 PSMG3-AS1Q96PY0 264 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 FAM83CQ9BQN1 747 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 C7orf69Q9H7B7 122 aa6.92□□□□□ -1.3
PRPF40A-207ENST00000471701 HMX2A2RU54 273 aa6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 GAS2O43903 313 aaKnown RBP6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 GRIK1P39086 918 aa6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 PDE4CQ08493 712 aa6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 HGSNATQ68CP4 663 aa6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 BEND4Q6ZU67 534 aa6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 ERICH6Q7L0X2 663 aa6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 GLYCTKQ8IVS8 523 aa6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 USP26Q9BXU7 913 aa6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 BHLHE41Q9C0J9 482 aaPredicted RBP6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 CYP4F12Q9HCS2 524 aa6.91□□□□□ -1.3
PRPF40A-207ENST00000471701 POLR3DP05423 398 aaPredicted RBP6.9□□□□□ -1.3
PRPF40A-207ENST00000471701 GSTM4Q03013 218 aa6.9□□□□□ -1.3
PRPF40A-207ENST00000471701 EXOSC6Q5RKV6 272 aaKnown RBP6.9□□□□□ -1.3
PRPF40A-207ENST00000471701 DBNDD2Q9BQY9 259 aa6.9□□□□□ -1.3
PRPF40A-207ENST00000471701 SOX17Q9H6I2 414 aaPredicted RBP6.9□□□□□ -1.3
PRPF40A-207ENST00000471701 HIF3AQ9Y2N7 669 aa6.9□□□□□ -1.3
PRPF40A-207ENST00000471701 TGFB1P01137 390 aa6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 ESRRAP11474 423 aaPredicted RBP6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 RXRBP28702 533 aa6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 PREPP48147 710 aa6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 PDE3BQ13370 1112 aa6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 PEAR1Q5VY43 1037 aaPredicted RBP6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 INTS5Q6P9B9 1019 aaKnown RBP6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 PPP1R3FQ6ZSY5 799 aaPredicted RBP6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 GIMAP7Q8NHV1 300 aa6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 ARID3AQ99856 593 aa6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 LATS2Q9NRM7 1088 aa6.89□□□□□ -1.31
PRPF40A-207ENST00000471701 A0A096LPE4 126 aa6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 A0A1W2PPZ6 126 aa6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 H3BRB1 525 aa6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 NDUFB5O43674 189 aa6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 USP11P51784 963 aa6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 GALNT12Q8IXK2 581 aa6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 SMG8Q8ND04 991 aaKnown RBP6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 DDX54Q8TDD1 881 aaKnown RBP6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 TUT1Q9H6E5 874 aaKnown RBP6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 LIN7BQ9HAP6 207 aa6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 ZFYVE1Q9HBF4 777 aa6.88□□□□□ -1.31
PRPF40A-207ENST00000471701 MAP4P27816 1152 aaKnown RBP6.87□□□□□ -1.31
PRPF40A-207ENST00000471701 SERPINB4P48594 390 aa6.87□□□□□ -1.31
PRPF40A-207ENST00000471701 CD97P48960 835 aa6.87□□□□□ -1.31
PRPF40A-207ENST00000471701 ZDHHC13Q8IUH4 622 aa6.87□□□□□ -1.31
PRPF40A-207ENST00000471701 TMC1Q8TDI8 760 aa6.87□□□□□ -1.31
PRPF40A-207ENST00000471701 TMPRSS13Q9BYE2 586 aa6.87□□□□□ -1.31
PRPF40A-207ENST00000471701 LOC100289279A0A1B0GTE1 492 aa6.86□□□□□ -1.31
PRPF40A-207ENST00000471701 A0A1W2PP55 124 aa6.86□□□□□ -1.31
PRPF40A-207ENST00000471701 METTL12A8MUP2 240 aa6.86□□□□□ -1.31
PRPF40A-207ENST00000471701 CYP11A1P05108 521 aa6.86□□□□□ -1.31
PRPF40A-207ENST00000471701 CITED4Q96RK1 184 aa6.86□□□□□ -1.31
PRPF40A-207ENST00000471701 CLEC4MQ9H2X3 399 aaPredicted RBP6.86□□□□□ -1.31
PRPF40A-207ENST00000471701 SUGCTQ9HAC7 445 aa6.86□□□□□ -1.31
PRPF40A-207ENST00000471701 ATG3Q9NT62 314 aa6.86□□□□□ -1.31
PRPF40A-207ENST00000471701 WDR64B1ANS9 1081 aa6.85□□□□□ -1.31
PRPF40A-207ENST00000471701 PCDH1Q08174 1060 aa6.85□□□□□ -1.31
PRPF40A-207ENST00000471701 NFKBIBQ15653 356 aa6.85□□□□□ -1.31
PRPF40A-207ENST00000471701 HP1BP3Q5SSJ5 553 aaPredicted RBP6.85□□□□□ -1.31
PRPF40A-207ENST00000471701 CCNJLQ8IV13 435 aa6.85□□□□□ -1.31
PRPF40A-207ENST00000471701 SHKBP1Q8TBC3 707 aa6.85□□□□□ -1.31
PRPF40A-207ENST00000471701 KRTAP4-8Q9BYQ9 185 aa6.85□□□□□ -1.31
PRPF40A-207ENST00000471701 FAM95CA0A1B0GW59 222 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 CPNE3O75131 537 aaKnown RBP6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 MED26O95402 600 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 DRD2P14416 443 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 SPRED3Q2MJR0 410 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 SGO2Q562F6 1265 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 PAOXQ6QHF9 649 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 CCER1Q8TC90 406 aaPredicted RBP6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 MFSD14AQ96MC6 490 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 YIPF2Q9BWQ6 316 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 EHD4Q9H223 541 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 RAD18Q9NS91 495 aa6.84□□□□□ -1.31
PRPF40A-207ENST00000471701 PRR19A6NJB7 356 aa6.83□□□□□ -1.32
PRPF40A-207ENST00000471701 SUPT5HO00267 1087 aaKnown RBP6.83□□□□□ -1.32
PRPF40A-207ENST00000471701 GRIA4P48058 902 aa6.83□□□□□ -1.32
PRPF40A-207ENST00000471701 SOX4Q06945 474 aaPredicted RBP6.83□□□□□ -1.32
PRPF40A-207ENST00000471701 POU4F3Q15319 338 aa6.83□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms