RNA–Protein interactions for RNA: ENST00000471188.5

VPS50-210, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 3,254 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-210ENST00000471188 SPDYE16A6NNV3 312 aaPredicted RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 RHOXF2BP0C7M4 288 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 ELF1P32519 619 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 STK3Q13188 491 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 ARMCX5Q6P1M9 558 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 CCDC73Q6ZRK6 1079 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 CEP57Q86XR8 500 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 CCDC12Q8WUD4 166 aaPredicted RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 CHMP7Q8WUX9 453 aaPredicted RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 LEO1Q8WVC0 666 aaPredicted RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 RABGGTAQ92696 567 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 RHOXF2Q9BQY4 288 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 SPG7Q9UQ90 795 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 ABCC4O15439 1325 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 TTC41PQ6P2S7 1318 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 H3BQV1 296 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 ZSCAN12O43309 604 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 WDHD1O75717 1129 aaPredicted RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 HMOX1P09601 288 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 PDCP20941 246 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 PRKAR2BP31323 418 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 TXLNAP40222 546 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 EN1Q05925 392 aaPredicted RBP4.87□□□□□ -1.63
VPS50-210ENST00000471188 SCRN1Q12765 414 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 MAP9Q49MG5 647 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 IFFO2Q5TF58 517 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 NBPF6Q5VWK0 638 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 UNC5CLQ8IV45 518 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 PDILTQ8N807 584 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 AFAP1L1Q8TED9 768 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 MIEF2Q96C03 454 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 NBPF4Q96M43 638 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 ODF2LQ9ULJ1 636 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 SH3BP1Q9Y3L3 701 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 SNX14Q9Y5W7 946 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 PARP3Q9Y6F1 533 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 FAM169AQ9Y6X4 670 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 CARMIL2Q6F5E8 1435 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 CD109Q6YHK3 1445 aa4.87□□□□□ -1.63
VPS50-210ENST00000471188 ABCC1P33527 1531 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 MED14O60244 1454 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 TROQ12816 1431 aaPredicted RBP4.86□□□□□ -1.63
VPS50-210ENST00000471188 EVC2Q86UK5 1308 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 BIN1O00499 593 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 KIAA0754O94854 1291 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 CPP00450 1065 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 HSPA4P34932 840 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 CHMP4BP1P59074 171 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 GOLGA8FQ08AF8 430 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 GOLGA8DPQ0D2H9 430 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 BRD3Q15059 726 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 PTPN21Q16825 1174 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 FMNL3Q8IVF7 1028 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 TRIM6Q9C030 488 aaPredicted RBP4.86□□□□□ -1.63
VPS50-210ENST00000471188 IL1RAPL2Q9NP60 686 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 IMPACTQ9P2X3 320 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 RNF17Q9BXT8 1623 aaKnown RBP4.86□□□□□ -1.63
VPS50-210ENST00000471188 PTPRMP28827 1452 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 PLA2R1Q13018 1463 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 ZNF518AQ6AHZ1 1483 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 EXOC5O00471 708 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 DIAPH1O60610 1272 aaKnown RBP4.86□□□□□ -1.63
VPS50-210ENST00000471188 LMOD1P29536 600 aaPredicted RBP4.86□□□□□ -1.63
VPS50-210ENST00000471188 PEX19P40855 299 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 CLNS1AP54105 237 aaKnown RBP4.86□□□□□ -1.63
VPS50-210ENST00000471188 GNAI1P63096 354 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 KARSQ15046 597 aaKnown RBP4.86□□□□□ -1.63
VPS50-210ENST00000471188 VPS53Q5VIR6 699 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 AP1ARQ63HQ0 302 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 C8orf58Q8NAV2 365 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 FAM71BQ8TC56 605 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 DHX58Q96C10 678 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 CABS1Q96KC9 395 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 TCEANC2Q96MN5 208 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 PLEKHF1Q96S99 279 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 MPHOSPH8Q99549 860 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 LRRCC1Q9C099 1032 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 IL25Q9H293 177 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 CD248Q9HCU0 757 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 ABCB6Q9NP58 842 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 CYP46A1Q9Y6A2 500 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 DEPDC5O75140 1603 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 LAMC1P11047 1609 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 MYO3AQ8NEV4 1616 aa4.86□□□□□ -1.63
VPS50-210ENST00000471188 SHTN1A0MZ66 631 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 RPS6KA5O75582 802 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 SERPINC1P01008 464 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 GCKP35557 465 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 SAFB2Q14151 953 aaKnown RBP eCLIP4.85□□□□□ -1.63
VPS50-210ENST00000471188 NAA25Q14CX7 972 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 CFAP100Q494V2 611 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 KCNV1Q6PIU1 500 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 CCAR1Q8IX12 1150 aaKnown RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 KIRREL3Q8IZU9 778 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 JMYQ8N9B5 988 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 PGBD1Q96JS3 809 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 WDR24Q96S15 920 aa4.85□□□□□ -1.63
VPS50-210ENST00000471188 OSBPL5Q9H0X9 879 aaPredicted RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 CPSF2Q9P2I0 782 aaKnown RBP4.85□□□□□ -1.63
VPS50-210ENST00000471188 ZC3H13Q5T200 1668 aaKnown RBP4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms