RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 WTIPA6NIX2 430 aaPredicted RBP7.04□□□□□ -1.28
PTPN4-209ENST00000469511 ECE2O60344 883 aa7.04□□□□□ -1.28
PTPN4-209ENST00000469511 BBOX1O75936 387 aa7.04□□□□□ -1.28
PTPN4-209ENST00000469511 SCARF1Q14162 830 aa7.04□□□□□ -1.28
PTPN4-209ENST00000469511 PKN2Q16513 984 aaKnown RBP7.04□□□□□ -1.28
PTPN4-209ENST00000469511 WASHC4Q2M389 1173 aa7.04□□□□□ -1.28
PTPN4-209ENST00000469511 PADI6Q6TGC4 694 aa7.04□□□□□ -1.28
PTPN4-209ENST00000469511 KIF6Q6ZMV9 814 aa7.04□□□□□ -1.28
PTPN4-209ENST00000469511 UTP14AQ9BVJ6 771 aaKnown RBP7.04□□□□□ -1.28
PTPN4-209ENST00000469511 NSFL1CQ9UNZ2 370 aaKnown RBP7.04□□□□□ -1.28
PTPN4-209ENST00000469511 OATP04181 439 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 TM4SF4P48230 202 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 PRSS12P56730 875 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 GRAPQ13588 217 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 PRKG1Q13976 671 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 PPP1R42Q7Z4L9 355 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 NLRP10Q86W26 655 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 SULF1Q8IWU6 871 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 GRAPLQ8TC17 118 aaPredicted RBP7.03□□□□□ -1.28
PTPN4-209ENST00000469511 RTF1Q92541 710 aaKnown RBP7.03□□□□□ -1.28
PTPN4-209ENST00000469511 TMUB1Q9BVT8 246 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 MXD3Q9BW11 206 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 ADGRG1Q9Y653 693 aa7.03□□□□□ -1.28
PTPN4-209ENST00000469511 PPP1R3GB7ZBB8 358 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 C6orf229H3BNL8 230 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 DLL1O00548 723 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 FKTNO75072 461 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 VIL1P09327 827 aaKnown RBP7.02□□□□□ -1.29
PTPN4-209ENST00000469511 EIF2S2P20042 333 aaKnown RBP7.02□□□□□ -1.29
PTPN4-209ENST00000469511 PTPREP23469 700 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 PTPN12Q05209 780 aaKnown RBP7.02□□□□□ -1.29
PTPN4-209ENST00000469511 AIMP1Q12904 312 aaKnown RBP7.02□□□□□ -1.29
PTPN4-209ENST00000469511 PARP10Q53GL7 1025 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 DDX46Q7L014 1031 aaKnown RBP7.02□□□□□ -1.29
PTPN4-209ENST00000469511 OTOP1Q7RTM1 612 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 METTL3Q86U44 580 aaKnown RBP7.02□□□□□ -1.29
PTPN4-209ENST00000469511 NECTIN2Q92692 538 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 CDCA7LQ96GN5 454 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 TMX4Q9H1E5 349 aaPredicted RBP7.02□□□□□ -1.29
PTPN4-209ENST00000469511 TRIM17Q9Y577 477 aa7.02□□□□□ -1.29
PTPN4-209ENST00000469511 SPEF2Q9C093 1822 aa7.01□□□□□ -1.29
PTPN4-209ENST00000469511 CUL9Q8IWT3 2517 aa7.01□□□□□ -1.29
PTPN4-209ENST00000469511 U2AF1L5P0DN76 240 aaPredicted RBP7.01□□□□□ -1.29
PTPN4-209ENST00000469511 COL9A1P20849 921 aa7.01□□□□□ -1.29
PTPN4-209ENST00000469511 ZNF280AP59817 542 aaPredicted RBP7.01□□□□□ -1.29
PTPN4-209ENST00000469511 U2AF1Q01081 240 aaKnown RBP eCLIP7.01□□□□□ -1.29
PTPN4-209ENST00000469511 TTLL12Q14166 644 aaPredicted RBP7.01□□□□□ -1.29
PTPN4-209ENST00000469511 NBPF9Q3BBW0 867 aa7.01□□□□□ -1.29
PTPN4-209ENST00000469511 RTL5Q5HYW3 569 aaPredicted RBP7.01□□□□□ -1.29
PTPN4-209ENST00000469511 TBC1D16Q8TBP0 767 aa7.01□□□□□ -1.29
PTPN4-209ENST00000469511 DDRGK1Q96HY6 314 aa7.01□□□□□ -1.29
PTPN4-209ENST00000469511 GMLQ99445 158 aa7.01□□□□□ -1.29
PTPN4-209ENST00000469511 PHOX2BQ99453 314 aa7.01□□□□□ -1.29
PTPN4-209ENST00000469511 TRMT112Q9UI30 125 aaKnown RBP7.01□□□□□ -1.29
PTPN4-209ENST00000469511 HTTP42858 3142 aa7.01□□□□□ -1.29
PTPN4-209ENST00000469511 LAMB1P07942 1786 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 H0YGN5 161 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 MYCP01106 439 aaPredicted RBP7□□□□□ -1.29
PTPN4-209ENST00000469511 RPS12P25398 132 aaKnown RBP7□□□□□ -1.29
PTPN4-209ENST00000469511 CLCN1P35523 988 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 KRT24Q2M2I5 525 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 COPS6Q7L5N1 327 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 IL27Q8NEV9 243 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 CD99L2Q8TCZ2 262 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 PXYLP1Q8TE99 480 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 XAGE3Q8WTP9 111 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 FAM89AQ96GI7 184 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 FAM117AQ9C073 453 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 SEC31BQ9NQW1 1179 aa7□□□□□ -1.29
PTPN4-209ENST00000469511 CENPFP49454 3210 aa6.99□□□□□ -1.29
PTPN4-209ENST00000469511 ATP5J2-PTCD1G3V325 749 aa6.99□□□□□ -1.29
PTPN4-209ENST00000469511 IGF2BP3O00425 579 aaKnown RBP eCLIP6.99□□□□□ -1.29
PTPN4-209ENST00000469511 HTATSF1O43719 755 aaKnown RBP6.99□□□□□ -1.29
PTPN4-209ENST00000469511 TCIRG1Q13488 830 aa6.99□□□□□ -1.29
PTPN4-209ENST00000469511 NOM1Q5C9Z4 860 aaKnown RBP6.99□□□□□ -1.29
PTPN4-209ENST00000469511 RSBN1LQ6PCB5 846 aaPredicted RBP6.99□□□□□ -1.29
PTPN4-209ENST00000469511 JARID2Q92833 1246 aaPredicted RBP6.99□□□□□ -1.29
PTPN4-209ENST00000469511 CFHR5Q9BXR6 569 aa6.99□□□□□ -1.29
PTPN4-209ENST00000469511 GPCPD1Q9NPB8 672 aa6.99□□□□□ -1.29
PTPN4-209ENST00000469511 MYOZ2Q9NPC6 264 aa6.99□□□□□ -1.29
PTPN4-209ENST00000469511 PTPN22Q9Y2R2 807 aa6.99□□□□□ -1.29
PTPN4-209ENST00000469511 BRCA2P51587 3418 aa6.99□□□□□ -1.29
PTPN4-209ENST00000469511 SH3TC1Q8TE82 1336 aa6.99□□□□□ -1.29
PTPN4-209ENST00000469511 FKBP1BP68106 108 aa6.98□□□□□ -1.29
PTPN4-209ENST00000469511 SPRYD7Q5W111 196 aa6.98□□□□□ -1.29
PTPN4-209ENST00000469511 CLMNQ96JQ2 1002 aa6.98□□□□□ -1.29
PTPN4-209ENST00000469511 REPIN1Q9BWE0 567 aaKnown RBP6.98□□□□□ -1.29
PTPN4-209ENST00000469511 TIMELESSQ9UNS1 1208 aa6.98□□□□□ -1.29
PTPN4-209ENST00000469511 PCDHAC2Q9Y5I4 1007 aa6.98□□□□□ -1.29
PTPN4-209ENST00000469511 OTOFQ9HC10 1997 aa6.98□□□□□ -1.29
PTPN4-209ENST00000469511 WNT10BO00744 389 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 UFL1O94874 794 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 SASH1O94885 1247 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 USP17L8P0C7I0 530 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 PPP2R1AP30153 589 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 GJA5P36382 358 aa6.97□□□□□ -1.29
PTPN4-209ENST00000469511 RPS8P62241 208 aaKnown RBP6.97□□□□□ -1.29
PTPN4-209ENST00000469511 MDM2Q00987 491 aaPredicted RBP6.97□□□□□ -1.29
PTPN4-209ENST00000469511 SF3B3Q15393 1217 aaKnown RBP6.97□□□□□ -1.29
PTPN4-209ENST00000469511 LDLRAD1Q5T700 205 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms