RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 DUOXA2Q1HG44 320 aa9.68□□□□□ -0.86
SYNE1-218ENST00000468937 FOXD4L6Q3SYB3 417 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-218ENST00000468937 FOXD4L3Q6VB84 417 aaPredicted RBP9.68□□□□□ -0.86
SYNE1-218ENST00000468937 VN1R5Q7Z5H4 357 aa9.68□□□□□ -0.86
SYNE1-218ENST00000468937 AEBP1Q8IUX7 1158 aa9.68□□□□□ -0.86
SYNE1-218ENST00000468937 A0A096LPE4 126 aa9.67□□□□□ -0.86
SYNE1-218ENST00000468937 A0A1W2PPZ6 126 aa9.67□□□□□ -0.86
SYNE1-218ENST00000468937 ACAD11Q709F0 780 aa9.67□□□□□ -0.86
SYNE1-218ENST00000468937 ZC3HAV1Q7Z2W4 902 aaKnown RBP9.67□□□□□ -0.86
SYNE1-218ENST00000468937 TP53INP1Q96A56 240 aa9.67□□□□□ -0.86
SYNE1-218ENST00000468937 TCF12Q99081 682 aa9.67□□□□□ -0.86
SYNE1-218ENST00000468937 SOX17Q9H6I2 414 aaPredicted RBP9.67□□□□□ -0.86
SYNE1-218ENST00000468937 SOX1O00570 391 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-218ENST00000468937 TM4SF5O14894 197 aa9.66□□□□□ -0.86
SYNE1-218ENST00000468937 TREHO43280 583 aa9.66□□□□□ -0.86
SYNE1-218ENST00000468937 GADD45BO75293 160 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-218ENST00000468937 H2AFB1P0C5Y9 115 aa9.66□□□□□ -0.86
SYNE1-218ENST00000468937 H2AFB2P0C5Z0 115 aa9.66□□□□□ -0.86
SYNE1-218ENST00000468937 SSBP4Q9BWG4 385 aaPredicted RBP9.66□□□□□ -0.86
SYNE1-218ENST00000468937 NLRP2Q9NX02 1062 aa9.66□□□□□ -0.86
SYNE1-218ENST00000468937 TRAK1Q9UPV9 953 aa9.66□□□□□ -0.86
SYNE1-218ENST00000468937 ALX3O95076 343 aa9.65□□□□□ -0.86
SYNE1-218ENST00000468937 ESRRAP11474 423 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-218ENST00000468937 DSC3Q14574 896 aa9.65□□□□□ -0.86
SYNE1-218ENST00000468937 RSPO4Q2I0M5 234 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-218ENST00000468937 NKAPLQ5M9Q1 402 aa9.65□□□□□ -0.86
SYNE1-218ENST00000468937 ASB16Q96NS5 453 aa9.65□□□□□ -0.86
SYNE1-218ENST00000468937 CEP41Q9BYV8 373 aa9.65□□□□□ -0.86
SYNE1-218ENST00000468937 CLEC4MQ9H2X3 399 aaPredicted RBP9.65□□□□□ -0.86
SYNE1-218ENST00000468937 PPP4R2Q9NY27 417 aa9.65□□□□□ -0.86
SYNE1-218ENST00000468937 KCNK4Q9NYG8 393 aa9.65□□□□□ -0.86
SYNE1-218ENST00000468937 METTL12A8MUP2 240 aa9.64□□□□□ -0.87
SYNE1-218ENST00000468937 GLB1P16278 677 aa9.64□□□□□ -0.87
SYNE1-218ENST00000468937 GRIA4P48058 902 aa9.64□□□□□ -0.87
SYNE1-218ENST00000468937 DZIP1LQ8IYY4 767 aaKnown RBP9.64□□□□□ -0.87
SYNE1-218ENST00000468937 DDX54Q8TDD1 881 aaKnown RBP9.64□□□□□ -0.87
SYNE1-218ENST00000468937 SEMA6BQ9H3T3 888 aa9.64□□□□□ -0.87
SYNE1-218ENST00000468937 DDX3YO15523 660 aaKnown RBP9.63□□□□□ -0.87
SYNE1-218ENST00000468937 NLRP12P59046 1061 aa9.63□□□□□ -0.87
SYNE1-218ENST00000468937 PCDH1Q08174 1060 aa9.63□□□□□ -0.87
SYNE1-218ENST00000468937 Q6ZS46 218 aa9.63□□□□□ -0.87
SYNE1-218ENST00000468937 AGGF1Q8N302 714 aaeCLIP9.63□□□□□ -0.87
SYNE1-218ENST00000468937 FOXD4L4Q8WXT5 416 aaPredicted RBP9.63□□□□□ -0.87
SYNE1-218ENST00000468937 MEGF10Q96KG7 1140 aa9.63□□□□□ -0.87
SYNE1-218ENST00000468937 PNMA6FA0A0J9YX94 578 aa9.62□□□□□ -0.87
SYNE1-218ENST00000468937 ADAM11O75078 769 aa9.62□□□□□ -0.87
SYNE1-218ENST00000468937 WISP1O95388 367 aa9.62□□□□□ -0.87
SYNE1-218ENST00000468937 PTPN12Q05209 780 aaKnown RBP9.62□□□□□ -0.87
SYNE1-218ENST00000468937 ENOX2Q16206 610 aaKnown RBP9.62□□□□□ -0.87
SYNE1-218ENST00000468937 SPRED3Q2MJR0 410 aa9.62□□□□□ -0.87
SYNE1-218ENST00000468937 PRPF40BQ6NWY9 871 aaKnown RBP9.62□□□□□ -0.87
SYNE1-218ENST00000468937 KIAA1211Q6ZU35 1233 aa9.62□□□□□ -0.87
SYNE1-218ENST00000468937 ZFYVE1Q9HBF4 777 aa9.62□□□□□ -0.87
SYNE1-218ENST00000468937 DYRK3O43781 588 aa9.61□□□□□ -0.87
SYNE1-218ENST00000468937 ITPKAP23677 461 aa9.61□□□□□ -0.87
SYNE1-218ENST00000468937 EPS8L3Q8TE67 593 aaKnown RBP9.61□□□□□ -0.87
SYNE1-218ENST00000468937 UBASH3BQ8TF42 649 aa9.61□□□□□ -0.87
SYNE1-218ENST00000468937 RNF208Q9H0X6 261 aa9.61□□□□□ -0.87
SYNE1-218ENST00000468937 GSTM4Q03013 218 aa9.6□□□□□ -0.87
SYNE1-218ENST00000468937 HGSNATQ68CP4 663 aa9.6□□□□□ -0.87
SYNE1-218ENST00000468937 SND1Q7KZF4 910 aaKnown RBP eCLIP9.6□□□□□ -0.87
SYNE1-218ENST00000468937 RUSC1Q9BVN2 902 aa9.6□□□□□ -0.87
SYNE1-218ENST00000468937 TMEM238LA0A1B0GVL6 79 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 MAPK8P45983 427 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 ATP2B2Q01814 1243 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 GRM2Q14416 872 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 UVSSAQ2YD98 709 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 RPS26P11Q5JNZ5 115 aaPredicted RBP9.59□□□□□ -0.87
SYNE1-218ENST00000468937 ANKRD34AQ69YU3 496 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 FBF1Q8TES7 1133 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 USP26Q9BXU7 913 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 ZNF576Q9H609 170 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 ABCB6Q9NP58 842 aa9.59□□□□□ -0.87
SYNE1-218ENST00000468937 MEGF11A6BM72 1044 aa9.58□□□□□ -0.88
SYNE1-218ENST00000468937 SART1O43290 800 aaKnown RBP9.58□□□□□ -0.88
SYNE1-218ENST00000468937 CYP11A1P05108 521 aa9.58□□□□□ -0.88
SYNE1-218ENST00000468937 XRCC5P13010 732 aaKnown RBP9.58□□□□□ -0.88
SYNE1-218ENST00000468937 FMR1Q06787 632 aaKnown RBP eCLIP9.58□□□□□ -0.88
SYNE1-218ENST00000468937 ZNF423Q2M1K9 1284 aa9.58□□□□□ -0.88
SYNE1-218ENST00000468937 HP1BP3Q5SSJ5 553 aaPredicted RBP9.58□□□□□ -0.88
SYNE1-218ENST00000468937 B3GALT4O96024 378 aa9.57□□□□□ -0.88
SYNE1-218ENST00000468937 ALG1LQ6GMV1 187 aa9.57□□□□□ -0.88
SYNE1-218ENST00000468937 LARP7Q4G0J3 582 aaKnown RBP eCLIP9.56□□□□□ -0.88
SYNE1-218ENST00000468937 NUTM2GQ5VZR2 741 aa9.56□□□□□ -0.88
SYNE1-218ENST00000468937 FDX2Q6P4F2 183 aa9.56□□□□□ -0.88
SYNE1-218ENST00000468937 DTHD1Q6ZMT9 781 aa9.56□□□□□ -0.88
SYNE1-218ENST00000468937 PRR23CQ6ZRP0 262 aa9.56□□□□□ -0.88
SYNE1-218ENST00000468937 UBL7Q96S82 380 aaPredicted RBP9.56□□□□□ -0.88
SYNE1-218ENST00000468937 BCO2Q9BYV7 579 aa9.56□□□□□ -0.88
SYNE1-218ENST00000468937 CYP4F12Q9HCS2 524 aa9.56□□□□□ -0.88
SYNE1-218ENST00000468937 LOC100289279A0A1B0GTE1 492 aa9.55□□□□□ -0.88
SYNE1-218ENST00000468937 DHX15O43143 795 aaKnown RBP9.55□□□□□ -0.88
SYNE1-218ENST00000468937 EXOSC6Q5RKV6 272 aaKnown RBP9.55□□□□□ -0.88
SYNE1-218ENST00000468937 GLIS3Q8NEA6 775 aa9.55□□□□□ -0.88
SYNE1-218ENST00000468937 GIPC1O14908 333 aa9.54□□□□□ -0.88
SYNE1-218ENST00000468937 FCGRTP55899 365 aa9.54□□□□□ -0.88
SYNE1-218ENST00000468937 FGD1P98174 961 aa9.54□□□□□ -0.88
SYNE1-218ENST00000468937 PI16Q6UXB8 463 aa9.54□□□□□ -0.88
SYNE1-218ENST00000468937 SLC51AQ86UW1 340 aa9.54□□□□□ -0.88
SYNE1-218ENST00000468937 UTP4Q969X6 686 aaKnown RBP9.54□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms