RNA–Protein interactions for RNA: ENST00000465514.1

USP39-212, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 660 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-212ENST00000465514 HDGFL1Q5TGJ6 251 aa12.62□□□□□ -0.39
USP39-212ENST00000465514 UBE2Q1Q7Z7E8 422 aa12.62□□□□□ -0.39
USP39-212ENST00000465514 DEFB123Q8N688 67 aa12.62□□□□□ -0.39
USP39-212ENST00000465514 ISCA1Q9BUE6 129 aa12.62□□□□□ -0.39
USP39-212ENST00000465514 ARHGAP39Q9C0H5 1083 aa12.62□□□□□ -0.39
USP39-212ENST00000465514 MYH3P11055 1940 aa12.62□□□□□ -0.39
USP39-212ENST00000465514 MED23Q9ULK4 1368 aa12.61□□□□□ -0.39
USP39-212ENST00000465514 ANKRD13DQ6ZTN6 518 aa12.61□□□□□ -0.39
USP39-212ENST00000465514 PLBD2Q8NHP8 589 aa12.61□□□□□ -0.39
USP39-212ENST00000465514 ZBED3Q96IU2 234 aaPredicted RBP12.61□□□□□ -0.39
USP39-212ENST00000465514 UNCXA6NJT0 531 aa12.6□□□□□ -0.39
USP39-212ENST00000465514 HOXB7P09629 217 aa12.6□□□□□ -0.39
USP39-212ENST00000465514 ATP2B4P23634 1241 aa12.6□□□□□ -0.39
USP39-212ENST00000465514 STRIP1Q5VSL9 837 aa12.6□□□□□ -0.39
USP39-212ENST00000465514 Q7L0L9 218 aa12.6□□□□□ -0.39
USP39-212ENST00000465514 KIAA0825Q8IV33 1275 aa12.6□□□□□ -0.39
USP39-212ENST00000465514 ZFYVE28Q9HCC9 887 aa12.6□□□□□ -0.39
USP39-212ENST00000465514 DBF4Q9UBU7 674 aaPredicted RBP12.6□□□□□ -0.39
USP39-212ENST00000465514 STXBP5LQ9Y2K9 1186 aa12.6□□□□□ -0.39
USP39-212ENST00000465514 LAMA2P24043 3122 aaKnown RBP12.59□□□□□ -0.39
USP39-212ENST00000465514 IREB2P48200 963 aaKnown RBP12.59□□□□□ -0.39
USP39-212ENST00000465514 LACTBP83111 547 aaPredicted RBP12.59□□□□□ -0.39
USP39-212ENST00000465514 DUSP27Q5VZP5 1158 aa12.59□□□□□ -0.39
USP39-212ENST00000465514 BRI3BPQ8WY22 251 aa12.59□□□□□ -0.39
USP39-212ENST00000465514 OPTNQ96CV9 577 aa12.59□□□□□ -0.39
USP39-212ENST00000465514 MS4A4AQ96JQ5 239 aa12.59□□□□□ -0.39
USP39-212ENST00000465514 CCDC85AQ96PX6 553 aaPredicted RBP12.59□□□□□ -0.39
USP39-212ENST00000465514 ELP3Q9H9T3 547 aa12.59□□□□□ -0.39
USP39-212ENST00000465514 HYPKQ9NX55 129 aa12.59□□□□□ -0.39
USP39-212ENST00000465514 STAP2Q9UGK3 403 aa12.59□□□□□ -0.39
USP39-212ENST00000465514 PPP2R3BQ9Y5P8 575 aa12.59□□□□□ -0.39
USP39-212ENST00000465514 MGAMO43451 1857 aa12.58□□□□□ -0.4
USP39-212ENST00000465514 GJA8P48165 433 aa12.58□□□□□ -0.4
USP39-212ENST00000465514 MMP14P50281 582 aa12.58□□□□□ -0.4
USP39-212ENST00000465514 ANKRD13AQ8IZ07 590 aa12.58□□□□□ -0.4
USP39-212ENST00000465514 NKX2-3Q8TAU0 364 aa12.58□□□□□ -0.4
USP39-212ENST00000465514 PRUNE2Q8WUY3 3088 aa12.58□□□□□ -0.4
USP39-212ENST00000465514 MBIPQ9NS73 344 aa12.58□□□□□ -0.4
USP39-212ENST00000465514 ARAP2Q8WZ64 1704 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 CCL15-CCL14A0A0B4J2E2 113 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 ABCB7O75027 752 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 USP2O75604 605 aaPredicted RBP12.57□□□□□ -0.4
USP39-212ENST00000465514 ECM2O94769 699 aaPredicted RBP12.57□□□□□ -0.4
USP39-212ENST00000465514 FARP2O94887 1054 aaPredicted RBP12.57□□□□□ -0.4
USP39-212ENST00000465514 KIF22Q14807 665 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 CCL15Q16663 113 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 SUPT20HL1Q3ZLR7 823 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 CCDC152Q4G0S7 254 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 NBPF12Q5TAG4 269 aaPredicted RBP12.57□□□□□ -0.4
USP39-212ENST00000465514 GPR153Q6NV75 609 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 ANKRD18AQ8IVF6 992 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 PHF6Q8IWS0 365 aaKnown RBP eCLIP12.57□□□□□ -0.4
USP39-212ENST00000465514 FAM43AQ8N2R8 423 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 ZNF804BA4D1E1 1349 aa12.57□□□□□ -0.4
USP39-212ENST00000465514 CLRN2A0PK11 232 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 EVI5O60447 810 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 GJB1P08034 283 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 ZNF853P0CG23 659 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 CCL5P13501 91 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 TRIM28Q13263 835 aaKnown RBP12.56□□□□□ -0.4
USP39-212ENST00000465514 DLGAP5Q15398 846 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 TTLL5Q6EMB2 1281 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 ZBTB38Q8NAP3 1195 aaPredicted RBP12.56□□□□□ -0.4
USP39-212ENST00000465514 COA1Q9GZY4 146 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 PRKRIP1Q9H875 184 aaPredicted RBP12.56□□□□□ -0.4
USP39-212ENST00000465514 MTMR10Q9NXD2 777 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 PCDHAC2Q9Y5I4 1007 aa12.56□□□□□ -0.4
USP39-212ENST00000465514 MUC3AQ02505 3323 aa12.55□□□□□ -0.4
USP39-212ENST00000465514 APAF1O14727 1248 aa12.55□□□□□ -0.4
USP39-212ENST00000465514 GNRH1P01148 92 aa12.55□□□□□ -0.4
USP39-212ENST00000465514 PRMT2P55345 433 aa12.55□□□□□ -0.4
USP39-212ENST00000465514 RIC3Q7Z5B4 369 aa12.55□□□□□ -0.4
USP39-212ENST00000465514 TXNRD3Q86VQ6 643 aa12.55□□□□□ -0.4
USP39-212ENST00000465514 RNF208Q9H0X6 261 aa12.55□□□□□ -0.4
USP39-212ENST00000465514 PHAXQ9H814 394 aaKnown RBP12.55□□□□□ -0.4
USP39-212ENST00000465514 TTC28Q96AY4 2481 aa12.54□□□□□ -0.4
USP39-212ENST00000465514 ELL2O00472 640 aaPredicted RBP12.54□□□□□ -0.4
USP39-212ENST00000465514 TLR2O60603 784 aa12.54□□□□□ -0.4
USP39-212ENST00000465514 GRK4P32298 578 aa12.54□□□□□ -0.4
USP39-212ENST00000465514 GTF2A2P52657 109 aa12.54□□□□□ -0.4
USP39-212ENST00000465514 GTF2IP78347 998 aa12.54□□□□□ -0.4
USP39-212ENST00000465514 GOLGA2Q08379 1002 aa12.54□□□□□ -0.4
USP39-212ENST00000465514 VEZTQ9HBM0 779 aa12.54□□□□□ -0.4
USP39-212ENST00000465514 IFT57Q9NWB7 429 aa12.54□□□□□ -0.4
USP39-212ENST00000465514 AOX1Q06278 1338 aa12.54□□□□□ -0.4
USP39-212ENST00000465514 A0A1B0GUL6 1792 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 MYO1BO43795 1136 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 HSP90B1P14625 803 aaKnown RBP12.53□□□□□ -0.4
USP39-212ENST00000465514 KLRK1P26718 216 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 CTGFP29279 349 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 CCT4P50991 539 aaKnown RBP12.53□□□□□ -0.4
USP39-212ENST00000465514 GNAI1P63096 354 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 MTMR14Q8NCE2 650 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 RAET1EQ8TD07 263 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 U2AF1L4Q8WU68 220 aaKnown RBP12.53□□□□□ -0.4
USP39-212ENST00000465514 JARID2Q92833 1246 aaPredicted RBP12.53□□□□□ -0.4
USP39-212ENST00000465514 PRDM6Q9NQX0 595 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 MINPP1Q9UNW1 487 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 RIPOR2Q9Y4F9 1068 aa12.53□□□□□ -0.4
USP39-212ENST00000465514 SPDYE2BA6NHP3 402 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms