RNA–Protein interactions for RNA: ENST00000460168.1

HERC4-207, Transcript of HECT and RLD domain containing E3 ubiquitin protein ligase 4, humanhuman

TSL 2

Gene HERC4, Length 2,215 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERC4-207ENST00000460168 CCDC102BQ68D86 513 aa12.37□□□□□ -0.43
HERC4-207ENST00000460168 SF3B2Q13435 895 aaKnown RBP12.37□□□□□ -0.43
HERC4-207ENST00000460168 SCARF1Q14162 830 aa12.37□□□□□ -0.43
HERC4-207ENST00000460168 EZH2Q15910 746 aaKnown RBP12.37□□□□□ -0.43
HERC4-207ENST00000460168 NLGN1Q8N2Q7 840 aa12.37□□□□□ -0.43
HERC4-207ENST00000460168 LSG1Q9H089 658 aaKnown RBP12.37□□□□□ -0.43
HERC4-207ENST00000460168 ANTXR1Q9H6X2 564 aa12.37□□□□□ -0.43
HERC4-207ENST00000460168 ARAP2Q8WZ64 1704 aa12.36□□□□□ -0.43
HERC4-207ENST00000460168 MCAMP43121 646 aa12.36□□□□□ -0.43
HERC4-207ENST00000460168 PHKA1P46020 1223 aa12.36□□□□□ -0.43
HERC4-207ENST00000460168 DDR1Q08345 913 aa12.36□□□□□ -0.43
HERC4-207ENST00000460168 PI16Q6UXB8 463 aa12.36□□□□□ -0.43
HERC4-207ENST00000460168 RPGRQ92834 1020 aaKnown RBP12.36□□□□□ -0.43
HERC4-207ENST00000460168 MINPP1Q9UNW1 487 aa12.36□□□□□ -0.43
HERC4-207ENST00000460168 POLRMTO00411 1230 aaKnown RBP12.35□□□□□ -0.43
HERC4-207ENST00000460168 UQCRFS1P1P0C7P4 283 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 ZAP70P43403 619 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 LRRFIP1Q32MZ4 808 aaKnown RBP12.35□□□□□ -0.43
HERC4-207ENST00000460168 ZNF512BQ96KM6 892 aaPredicted RBP12.35□□□□□ -0.43
HERC4-207ENST00000460168 CCDC171Q6TFL3 1326 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 IRF6O14896 467 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 ARID4AP29374 1257 aaPredicted RBP12.35□□□□□ -0.43
HERC4-207ENST00000460168 HSPA4P34932 840 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 KCNJ4P48050 445 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 SNX21Q969T3 373 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 CAMKK2Q96RR4 588 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 PALD1Q9ULE6 856 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 PNPLA7Q6ZV29 1317 aa12.35□□□□□ -0.43
HERC4-207ENST00000460168 MED23Q9ULK4 1368 aa12.34□□□□□ -0.43
HERC4-207ENST00000460168 CHGBP05060 677 aa12.34□□□□□ -0.43
HERC4-207ENST00000460168 PTH1RQ03431 593 aa12.34□□□□□ -0.43
HERC4-207ENST00000460168 ZNF589Q86UQ0 364 aaPredicted RBP12.34□□□□□ -0.43
HERC4-207ENST00000460168 ST18O60284 1047 aa12.34□□□□□ -0.43
HERC4-207ENST00000460168 UBE4AQ14139 1066 aa12.34□□□□□ -0.43
HERC4-207ENST00000460168 TTF1Q15361 905 aaPredicted RBP12.34□□□□□ -0.43
HERC4-207ENST00000460168 MCMDC2Q4G0Z9 681 aa12.34□□□□□ -0.43
HERC4-207ENST00000460168 SEC62Q99442 399 aaKnown RBP12.34□□□□□ -0.43
HERC4-207ENST00000460168 A0A1B0GUL6 1792 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 BAG6P46379 1132 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 BCAMP50895 628 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 SEMA3FQ13275 785 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 GRAPQ13588 217 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 GRAPLQ8TC17 118 aaPredicted RBP12.33□□□□□ -0.44
HERC4-207ENST00000460168 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.33□□□□□ -0.44
HERC4-207ENST00000460168 ANKRD2Q9GZV1 360 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 AKAP11Q9UKA4 1901 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 RNF113AO15541 343 aaKnown RBP12.33□□□□□ -0.44
HERC4-207ENST00000460168 CD2BP2O95400 341 aaKnown RBP12.33□□□□□ -0.44
HERC4-207ENST00000460168 SLC15A2Q16348 729 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 CRY2Q49AN0 593 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 CAVIN4Q5BKX8 364 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 VPS37DQ86XT2 251 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 SPATA5Q8NB90 893 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 STK32BQ9NY57 414 aa12.33□□□□□ -0.44
HERC4-207ENST00000460168 CYP2E1P05181 493 aaPredicted RBP12.32□□□□□ -0.44
HERC4-207ENST00000460168 ZFYP08048 801 aaPredicted RBP12.32□□□□□ -0.44
HERC4-207ENST00000460168 MMP10P09238 476 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 RASGRF1Q13972 1273 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 SLFNL1Q499Z3 407 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 MSL1Q68DK7 614 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 CCDC129Q6ZRS4 1044 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 SPRYD3Q8NCJ5 442 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 MAP4K1Q92918 833 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 HELLSQ9NRZ9 838 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 HMG20BQ9P0W2 317 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 RBM8AQ9Y5S9 174 aaKnown RBP12.32□□□□□ -0.44
HERC4-207ENST00000460168 PARP3Q9Y6F1 533 aa12.32□□□□□ -0.44
HERC4-207ENST00000460168 K7ELQ4 463 aaPredicted RBP12.31□□□□□ -0.44
HERC4-207ENST00000460168 IDH1O75874 414 aaKnown RBP12.31□□□□□ -0.44
HERC4-207ENST00000460168 NEK4P51957 841 aa12.31□□□□□ -0.44
HERC4-207ENST00000460168 WASHC4Q2M389 1173 aa12.31□□□□□ -0.44
HERC4-207ENST00000460168 ZMYM1Q5SVZ6 1142 aa12.31□□□□□ -0.44
HERC4-207ENST00000460168 PRPF40BQ6NWY9 871 aaKnown RBP12.31□□□□□ -0.44
HERC4-207ENST00000460168 RBM17Q96I25 401 aaKnown RBP12.31□□□□□ -0.44
HERC4-207ENST00000460168 SLKQ9H2G2 1235 aaPredicted RBP12.31□□□□□ -0.44
HERC4-207ENST00000460168 GNL3LQ9NVN8 582 aaKnown RBP12.31□□□□□ -0.44
HERC4-207ENST00000460168 ANKIB1Q9P2G1 1089 aa12.31□□□□□ -0.44
HERC4-207ENST00000460168 WTIPA6NIX2 430 aaPredicted RBP12.31□□□□□ -0.44
HERC4-207ENST00000460168 ZKSCAN1P17029 563 aaPredicted RBP12.31□□□□□ -0.44
HERC4-207ENST00000460168 GYG1P46976 350 aa12.31□□□□□ -0.44
HERC4-207ENST00000460168 IRX5P78411 483 aaPredicted RBP12.31□□□□□ -0.44
HERC4-207ENST00000460168 ZSCAN25Q6NSZ9 544 aa12.31□□□□□ -0.44
HERC4-207ENST00000460168 RNF20Q5VTR2 975 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 DEFB132Q7Z7B7 95 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 IQSEC3Q9UPP2 1182 aaPredicted RBP12.3□□□□□ -0.44
HERC4-207ENST00000460168 SNX14Q9Y5W7 946 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 MYH7P12883 1935 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 NECTIN1Q15223 517 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 NBPF9Q3BBW0 867 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 SLC9C2Q5TAH2 1124 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 RASEFQ8IZ41 740 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 UPF3BQ9BZI7 483 aaKnown RBP12.3□□□□□ -0.44
HERC4-207ENST00000460168 ZNF804BA4D1E1 1349 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 MAST3O60307 1309 aa12.3□□□□□ -0.44
HERC4-207ENST00000460168 FRAT2O75474 233 aaPredicted RBP12.29□□□□□ -0.44
HERC4-207ENST00000460168 APPBP2Q92624 585 aa12.29□□□□□ -0.44
HERC4-207ENST00000460168 OSBP2Q969R2 916 aa12.29□□□□□ -0.44
HERC4-207ENST00000460168 IL17RAQ96F46 866 aa12.29□□□□□ -0.44
HERC4-207ENST00000460168 BRIP1Q9BX63 1249 aa12.29□□□□□ -0.44
HERC4-207ENST00000460168 PIH1D3Q9NQM4 214 aaKnown RBP12.29□□□□□ -0.44
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms