RNA–Protein interactions for RNA: ENST00000447654.5

HMGA1-205, Transcript of high mobility group AT-hook 1, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene HMGA1, Length 2,159 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-205ENST00000447654 HDXQ7Z353 690 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 ERC1Q8IUD2 1116 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 RASEFQ8IZ41 740 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 PARD6BQ9BYG5 372 aa22.18■■□□□ 1.14
HMGA1-205ENST00000447654 ZSCAN12O43309 604 aa22.17■■□□□ 1.14
HMGA1-205ENST00000447654 DNAAF4Q8WXU2 420 aa22.17■■□□□ 1.14
HMGA1-205ENST00000447654 GOLGA1Q92805 767 aa22.17■■□□□ 1.14
HMGA1-205ENST00000447654 PGBD1Q96JS3 809 aa22.17■■□□□ 1.14
HMGA1-205ENST00000447654 N4BP2Q86UW6 1770 aaPredicted RBP22.17■■□□□ 1.14
HMGA1-205ENST00000447654 TXLNAP40222 546 aa22.16■■□□□ 1.14
HMGA1-205ENST00000447654 TSHZ3Q63HK5 1081 aa22.16■■□□□ 1.14
HMGA1-205ENST00000447654 A1CFQ9NQ94 594 aaKnown RBP22.16■■□□□ 1.14
HMGA1-205ENST00000447654 USP5P45974 858 aa22.16■■□□□ 1.14
HMGA1-205ENST00000447654 PROSER3Q2NL68 480 aa22.16■■□□□ 1.14
HMGA1-205ENST00000447654 DNAJC21Q5F1R6 531 aaKnown RBP22.16■■□□□ 1.14
HMGA1-205ENST00000447654 VPS18Q9P253 973 aa22.16■■□□□ 1.14
HMGA1-205ENST00000447654 CALRP27797 417 aaKnown RBP22.15■■□□□ 1.14
HMGA1-205ENST00000447654 ATP8B2P98198 1209 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 ST3GAL1Q11201 340 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 CHRNA2Q15822 529 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 CNPY4Q8N129 248 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 STAG1Q8WVM7 1258 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 CFAP45Q9UL16 551 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 PI4KAP2A4QPH2 592 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 E2F4Q16254 413 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 PI4KAP1Q8N8J0 262 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 FAM71BQ8TC56 605 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 IL25Q9H293 177 aa22.15■■□□□ 1.14
HMGA1-205ENST00000447654 PXDNLA1KZ92 1463 aa22.14■■□□□ 1.14
HMGA1-205ENST00000447654 HOXB7P09629 217 aa22.14■■□□□ 1.13
HMGA1-205ENST00000447654 PPP2R3AQ06190 1150 aa22.14■■□□□ 1.13
HMGA1-205ENST00000447654 EGFL6Q8IUX8 553 aa22.14■■□□□ 1.13
HMGA1-205ENST00000447654 UNC5CLQ8IV45 518 aa22.14■■□□□ 1.13
HMGA1-205ENST00000447654 NLRP2Q9NX02 1062 aa22.14■■□□□ 1.13
HMGA1-205ENST00000447654 RAI14Q9P0K7 980 aa22.14■■□□□ 1.13
HMGA1-205ENST00000447654 MRFAP1Q9Y605 127 aa22.14■■□□□ 1.13
HMGA1-205ENST00000447654 ERLIN1O75477 346 aa22.14■■□□□ 1.13
HMGA1-205ENST00000447654 NBPF7P0C2Y1 421 aaPredicted RBP22.14■■□□□ 1.13
HMGA1-205ENST00000447654 ME3Q16798 604 aa22.14■■□□□ 1.13
HMGA1-205ENST00000447654 ALDH8A1Q9H2A2 487 aaPredicted RBP22.14■■□□□ 1.13
HMGA1-205ENST00000447654 CRYBG1Q9Y4K1 1723 aa22.13■■□□□ 1.13
HMGA1-205ENST00000447654 COL18A1P39060 1754 aa22.13■■□□□ 1.13
HMGA1-205ENST00000447654 ANKRD1Q15327 319 aa22.13■■□□□ 1.13
HMGA1-205ENST00000447654 LRRC31Q6UY01 552 aa22.13■■□□□ 1.13
HMGA1-205ENST00000447654 RBM28Q9NW13 759 aaKnown RBP22.13■■□□□ 1.13
HMGA1-205ENST00000447654 HEG1Q9ULI3 1381 aa22.13■■□□□ 1.13
HMGA1-205ENST00000447654 DCCP43146 1447 aa22.13■■□□□ 1.13
HMGA1-205ENST00000447654 ADCY9O60503 1353 aa22.12■■□□□ 1.13
HMGA1-205ENST00000447654 TUBBP07437 444 aa22.12■■□□□ 1.13
HMGA1-205ENST00000447654 ACBD3Q9H3P7 528 aa22.12■■□□□ 1.13
HMGA1-205ENST00000447654 SIPA1L3O60292 1781 aaPredicted RBP22.12■■□□□ 1.13
HMGA1-205ENST00000447654 NBPF20Q3BBV1 942 aa22.12■■□□□ 1.13
HMGA1-205ENST00000447654 BEND3Q5T5X7 828 aa22.12■■□□□ 1.13
HMGA1-205ENST00000447654 MEGF6O75095 1541 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 C21orf2O43822 256 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 UBTFL1P0CB47 393 aaPredicted RBP22.11■■□□□ 1.13
HMGA1-205ENST00000447654 TMC6Q7Z403 805 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 CADPS2Q86UW7 1296 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 RUFY2Q8WXA3 655 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 RAB21Q9UL25 225 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 XIRP1Q702N8 1843 aaKnown RBP22.11■■□□□ 1.13
HMGA1-205ENST00000447654 GRIPAP1Q4V328 841 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 FERMT3Q86UX7 667 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 CNTROBQ8N137 903 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 PDE11AQ9HCR9 933 aa22.11■■□□□ 1.13
HMGA1-205ENST00000447654 CCDC189A1A4V9 331 aa22.1■■□□□ 1.13
HMGA1-205ENST00000447654 KIF3CO14782 793 aa22.1■■□□□ 1.13
HMGA1-205ENST00000447654 SLC39A6Q13433 755 aa22.1■■□□□ 1.13
HMGA1-205ENST00000447654 GNL2Q13823 731 aaKnown RBP22.1■■□□□ 1.13
HMGA1-205ENST00000447654 BEND6Q5SZJ8 279 aaPredicted RBP22.1■■□□□ 1.13
HMGA1-205ENST00000447654 AOPEPQ8N6M6 819 aa22.1■■□□□ 1.13
HMGA1-205ENST00000447654 KDM6AO15550 1401 aaPredicted RBP22.1■■□□□ 1.13
HMGA1-205ENST00000447654 ADAMTS7Q9UKP4 1686 aa22.1■■□□□ 1.13
HMGA1-205ENST00000447654 PPP1R12AO14974 1030 aaPredicted RBP22.09■■□□□ 1.13
HMGA1-205ENST00000447654 FOXR1Q6PIV2 292 aa22.09■■□□□ 1.13
HMGA1-205ENST00000447654 EP400NLQ6ZTU2 488 aa22.09■■□□□ 1.13
HMGA1-205ENST00000447654 JAKMIP1Q96N16 626 aaKnown RBP22.09■■□□□ 1.13
HMGA1-205ENST00000447654 GBP3Q9H0R5 595 aa22.09■■□□□ 1.13
HMGA1-205ENST00000447654 OVOS2A0A0G2JMS6 1433 aa22.09■■□□□ 1.13
HMGA1-205ENST00000447654 HSP90B2PQ58FF3 399 aa22.09■■□□□ 1.13
HMGA1-205ENST00000447654 ATL3Q6DD88 541 aa22.09■■□□□ 1.13
HMGA1-205ENST00000447654 DDX11Q96FC9 970 aa22.09■■□□□ 1.13
HMGA1-205ENST00000447654 TFIP11Q9UBB9 837 aaKnown RBP22.09■■□□□ 1.13
HMGA1-205ENST00000447654 AKAP2Q9Y2D5 859 aa22.09■■□□□ 1.13
HMGA1-205ENST00000447654 TNS3Q68CZ2 1445 aa22.09■■□□□ 1.13
HMGA1-205ENST00000447654 ERLIN2O94905 339 aa22.08■■□□□ 1.13
HMGA1-205ENST00000447654 TUBB2AQ13885 445 aa22.08■■□□□ 1.13
HMGA1-205ENST00000447654 LARP6Q9BRS8 491 aaKnown RBP22.08■■□□□ 1.13
HMGA1-205ENST00000447654 TUBB2BQ9BVA1 445 aa22.08■■□□□ 1.13
HMGA1-205ENST00000447654 XPO4Q9C0E2 1151 aaKnown RBP22.08■■□□□ 1.13
HMGA1-205ENST00000447654 SPATA31A3Q5VYP0 1347 aa22.08■■□□□ 1.12
HMGA1-205ENST00000447654 KINO60870 393 aaKnown RBP22.08■■□□□ 1.12
HMGA1-205ENST00000447654 RAB11FIP3O75154 756 aa22.08■■□□□ 1.12
HMGA1-205ENST00000447654 FAM173BQ6P4H8 233 aa22.08■■□□□ 1.12
HMGA1-205ENST00000447654 CCDC73Q6ZRK6 1079 aa22.08■■□□□ 1.12
HMGA1-205ENST00000447654 PPP1R42Q7Z4L9 355 aa22.08■■□□□ 1.12
HMGA1-205ENST00000447654 PSMA5P28066 241 aa22.07■■□□□ 1.12
HMGA1-205ENST00000447654 MSANTD4Q8NCY6 345 aa22.07■■□□□ 1.12
HMGA1-205ENST00000447654 SSH3Q8TE77 659 aa22.07■■□□□ 1.12
HMGA1-205ENST00000447654 RAPGEF4Q8WZA2 1011 aa22.07■■□□□ 1.12
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms