RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 SART1O43290 800 aaKnown RBP7.56□□□□□ -1.2
VPS29-202ENST00000447578 ADAMTS4O75173 837 aa7.56□□□□□ -1.2
VPS29-202ENST00000447578 BMP3P12645 472 aa7.56□□□□□ -1.2
VPS29-202ENST00000447578 PCSK2P16519 638 aa7.56□□□□□ -1.2
VPS29-202ENST00000447578 RNF43Q68DV7 783 aa7.56□□□□□ -1.2
VPS29-202ENST00000447578 FAM20CQ8IXL6 584 aa7.56□□□□□ -1.2
VPS29-202ENST00000447578 TTC16Q8NEE8 873 aa7.56□□□□□ -1.2
VPS29-202ENST00000447578 KCNF1Q9H3M0 494 aa7.56□□□□□ -1.2
VPS29-202ENST00000447578 OSGEPQ9NPF4 335 aa7.56□□□□□ -1.2
VPS29-202ENST00000447578 SOX13Q9UN79 622 aa7.56□□□□□ -1.2
VPS29-202ENST00000447578 PRR19A6NJB7 356 aa7.55□□□□□ -1.2
VPS29-202ENST00000447578 EREGO14944 169 aa7.55□□□□□ -1.2
VPS29-202ENST00000447578 LCE4AQ5TA78 99 aa7.55□□□□□ -1.2
VPS29-202ENST00000447578 WNT8BQ93098 351 aa7.55□□□□□ -1.2
VPS29-202ENST00000447578 OSMRQ99650 979 aa7.55□□□□□ -1.2
VPS29-202ENST00000447578 RUSC1Q9BVN2 902 aa7.55□□□□□ -1.2
VPS29-202ENST00000447578 TMEM88BA6NKF7 163 aa7.54□□□□□ -1.2
VPS29-202ENST00000447578 KIAA1324LA8MWY0 1029 aaPredicted RBP7.54□□□□□ -1.2
VPS29-202ENST00000447578 SOX1O00570 391 aaPredicted RBP7.54□□□□□ -1.2
VPS29-202ENST00000447578 SSFA2P28290 1259 aa7.54□□□□□ -1.2
VPS29-202ENST00000447578 BEND4Q6ZU67 534 aa7.54□□□□□ -1.2
VPS29-202ENST00000447578 CLEC10AQ8IUN9 316 aa7.54□□□□□ -1.2
VPS29-202ENST00000447578 TMEM102Q8N9M5 508 aaPredicted RBP7.54□□□□□ -1.2
VPS29-202ENST00000447578 NXPE3Q969Y0 559 aa7.54□□□□□ -1.2
VPS29-202ENST00000447578 FAM83CQ9BQN1 747 aa7.54□□□□□ -1.2
VPS29-202ENST00000447578 DBNDD2Q9BQY9 259 aa7.54□□□□□ -1.2
VPS29-202ENST00000447578 ZKSCAN3Q9BRR0 538 aa7.54□□□□□ -1.2
VPS29-202ENST00000447578 RNF208Q9H0X6 261 aa7.54□□□□□ -1.2
VPS29-202ENST00000447578 FOXD3Q9UJU5 478 aaPredicted RBP7.54□□□□□ -1.2
VPS29-202ENST00000447578 CARNS1A5YM72 827 aa7.53□□□□□ -1.2
VPS29-202ENST00000447578 TNFRSF21O75509 655 aa7.53□□□□□ -1.2
VPS29-202ENST00000447578 C19orf57Q0VDD7 668 aa7.53□□□□□ -1.2
VPS29-202ENST00000447578 AAMPQ13685 434 aa7.53□□□□□ -1.2
VPS29-202ENST00000447578 ANKRD34AQ69YU3 496 aa7.53□□□□□ -1.2
VPS29-202ENST00000447578 PPP1R3FQ6ZSY5 799 aaPredicted RBP7.53□□□□□ -1.2
VPS29-202ENST00000447578 VN1R5Q7Z5H4 357 aa7.53□□□□□ -1.2
VPS29-202ENST00000447578 SHKBP1Q8TBC3 707 aa7.53□□□□□ -1.2
VPS29-202ENST00000447578 PMEPA1Q969W9 287 aa7.53□□□□□ -1.2
VPS29-202ENST00000447578 PHACTR2O75167 634 aa7.52□□□□□ -1.21
VPS29-202ENST00000447578 FDX2Q6P4F2 183 aa7.52□□□□□ -1.21
VPS29-202ENST00000447578 BSNDQ8WZ55 320 aa7.52□□□□□ -1.21
VPS29-202ENST00000447578 LATS2Q9NRM7 1088 aa7.52□□□□□ -1.21
VPS29-202ENST00000447578 SPINK2P20155 84 aa7.51□□□□□ -1.21
VPS29-202ENST00000447578 ARL4DP49703 201 aa7.51□□□□□ -1.21
VPS29-202ENST00000447578 IKBKEQ14164 716 aa7.51□□□□□ -1.21
VPS29-202ENST00000447578 ASAP3Q8TDY4 903 aa7.51□□□□□ -1.21
VPS29-202ENST00000447578 WDR64B1ANS9 1081 aa7.5□□□□□ -1.21
VPS29-202ENST00000447578 DLGAP3O95886 979 aa7.5□□□□□ -1.21
VPS29-202ENST00000447578 GRIK1P39086 918 aa7.5□□□□□ -1.21
VPS29-202ENST00000447578 SGO2Q562F6 1265 aa7.5□□□□□ -1.21
VPS29-202ENST00000447578 ALKBH2Q6NS38 261 aa7.5□□□□□ -1.21
VPS29-202ENST00000447578 CCDC82Q8N4S0 544 aa7.5□□□□□ -1.21
VPS29-202ENST00000447578 C12orf50Q8NA57 414 aaPredicted RBP7.5□□□□□ -1.21
VPS29-202ENST00000447578 MFSD14AQ96MC6 490 aa7.5□□□□□ -1.21
VPS29-202ENST00000447578 USP26Q9BXU7 913 aa7.5□□□□□ -1.21
VPS29-202ENST00000447578 ANO2Q9NQ90 1003 aa7.5□□□□□ -1.21
VPS29-202ENST00000447578 MEGF11A6BM72 1044 aa7.49□□□□□ -1.21
VPS29-202ENST00000447578 METTL12A8MUP2 240 aa7.49□□□□□ -1.21
VPS29-202ENST00000447578 GAS2O43903 313 aaKnown RBP7.49□□□□□ -1.21
VPS29-202ENST00000447578 FZD6O60353 706 aa7.49□□□□□ -1.21
VPS29-202ENST00000447578 NPR3P17342 541 aa7.49□□□□□ -1.21
VPS29-202ENST00000447578 MAP4P27816 1152 aaKnown RBP7.49□□□□□ -1.21
VPS29-202ENST00000447578 PEAR1Q5VY43 1037 aaPredicted RBP7.49□□□□□ -1.21
VPS29-202ENST00000447578 KRTAP5-3Q6L8H2 238 aa7.49□□□□□ -1.21
VPS29-202ENST00000447578 PHLDB3Q6NSJ2 640 aa7.49□□□□□ -1.21
VPS29-202ENST00000447578 INTS5Q6P9B9 1019 aaKnown RBP7.49□□□□□ -1.21
VPS29-202ENST00000447578 CCDC87Q9NVE4 849 aa7.49□□□□□ -1.21
VPS29-202ENST00000447578 LOC100289279A0A1B0GTE1 492 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 POLR3DP05423 398 aaPredicted RBP7.48□□□□□ -1.21
VPS29-202ENST00000447578 EDN3P14138 238 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 DRD2P14416 443 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 HOXA10P31260 410 aaPredicted RBP7.48□□□□□ -1.21
VPS29-202ENST00000447578 NUTM2GQ5VZR2 741 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 DTX1Q86Y01 620 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 SHISA5Q8N114 240 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 SNX29Q8TEQ0 813 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 ARID3AQ99856 593 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 TMPRSS13Q9BYE2 586 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 HIF3AQ9Y2N7 669 aa7.48□□□□□ -1.21
VPS29-202ENST00000447578 FAM13AO94988 1023 aa7.47□□□□□ -1.21
VPS29-202ENST00000447578 ESRRAP11474 423 aaPredicted RBP7.47□□□□□ -1.21
VPS29-202ENST00000447578 RXRBP28702 533 aa7.47□□□□□ -1.21
VPS29-202ENST00000447578 FBXL6Q8N531 539 aa7.47□□□□□ -1.21
VPS29-202ENST00000447578 BHLHE41Q9C0J9 482 aaPredicted RBP7.47□□□□□ -1.21
VPS29-202ENST00000447578 ABL1P00519 1130 aa7.46□□□□□ -1.22
VPS29-202ENST00000447578 ZNF211Q13398 564 aaPredicted RBP7.46□□□□□ -1.22
VPS29-202ENST00000447578 SMG8Q8ND04 991 aaKnown RBP7.46□□□□□ -1.22
VPS29-202ENST00000447578 ZFYVE28Q9HCC9 887 aa7.46□□□□□ -1.22
VPS29-202ENST00000447578 TIAF1O95411 115 aa7.45□□□□□ -1.22
VPS29-202ENST00000447578 F13BP05160 661 aa7.45□□□□□ -1.22
VPS29-202ENST00000447578 USP5P45974 858 aa7.45□□□□□ -1.22
VPS29-202ENST00000447578 FKBP4Q02790 459 aaKnown RBP eCLIP7.45□□□□□ -1.22
VPS29-202ENST00000447578 GSTM4Q03013 218 aa7.45□□□□□ -1.22
VPS29-202ENST00000447578 EHHADHQ08426 723 aa7.45□□□□□ -1.22
VPS29-202ENST00000447578 CCER1Q8TC90 406 aaPredicted RBP7.45□□□□□ -1.22
VPS29-202ENST00000447578 C1orf115Q9H7X2 142 aa7.45□□□□□ -1.22
VPS29-202ENST00000447578 AMOTL2Q9Y2J4 779 aa7.45□□□□□ -1.22
VPS29-202ENST00000447578 WNT11O96014 354 aa7.44□□□□□ -1.22
VPS29-202ENST00000447578 NFKBIBQ15653 356 aa7.44□□□□□ -1.22
VPS29-202ENST00000447578 EXOSC6Q5RKV6 272 aaKnown RBP7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms