RNA–Protein interactions for RNA: ENST00000441114.5

SHH-204, Transcript of sonic hedgehog, humanhuman

TSL 1 (best)

Gene SHH, Length 888 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-204ENST00000441114 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP23.09■■□□□ 1.29
SHH-204ENST00000441114 F8W031 263 aaPredicted RBP23.08■■□□□ 1.29
SHH-204ENST00000441114 HSPA6P17066 643 aa23.08■■□□□ 1.29
SHH-204ENST00000441114 ADORA1P30542 326 aa23.08■■□□□ 1.29
SHH-204ENST00000441114 KIF4BQ2VIQ3 1234 aa23.08■■□□□ 1.29
SHH-204ENST00000441114 CNTROBQ8N137 903 aa23.08■■□□□ 1.29
SHH-204ENST00000441114 NEUROD6Q96NK8 337 aa23.08■■□□□ 1.29
SHH-204ENST00000441114 AKAP2Q9Y2D5 859 aa23.08■■□□□ 1.29
SHH-204ENST00000441114 A0A1B0GUL7 405 aa23.07■■□□□ 1.28
SHH-204ENST00000441114 CERS5Q8N5B7 392 aa23.07■■□□□ 1.28
SHH-204ENST00000441114 ZNF609O15014 1411 aa23.07■■□□□ 1.28
SHH-204ENST00000441114 ARAP2Q8WZ64 1704 aa23.06■■□□□ 1.28
SHH-204ENST00000441114 ZNF280AP59817 542 aaPredicted RBP23.06■■□□□ 1.28
SHH-204ENST00000441114 RPAP2Q8IXW5 612 aaPredicted RBP23.06■■□□□ 1.28
SHH-204ENST00000441114 OGFOD1Q8N543 542 aa23.06■■□□□ 1.28
SHH-204ENST00000441114 MYOZ2Q9NPC6 264 aa23.06■■□□□ 1.28
SHH-204ENST00000441114 FAM205AQ6ZU69 1335 aa23.06■■□□□ 1.28
SHH-204ENST00000441114 POLR2AP24928 1970 aaKnown RBP23.05■■□□□ 1.28
SHH-204ENST00000441114 HDAC9Q9UKV0 1011 aa23.05■■□□□ 1.28
SHH-204ENST00000441114 EXOC6BQ9Y2D4 811 aa23.05■■□□□ 1.28
SHH-204ENST00000441114 MFSD14BQ5SR56 506 aa23.04■■□□□ 1.28
SHH-204ENST00000441114 XAGE2Q96GT9 111 aa23.04■■□□□ 1.28
SHH-204ENST00000441114 NOP58Q9Y2X3 529 aaKnown RBP23.04■■□□□ 1.28
SHH-204ENST00000441114 HMMRO75330 724 aa23.03■■□□□ 1.28
SHH-204ENST00000441114 ITGBL1O95965 494 aaPredicted RBP23.03■■□□□ 1.28
SHH-204ENST00000441114 PHKA1P46020 1223 aa23.03■■□□□ 1.28
SHH-204ENST00000441114 SIRT2Q8IXJ6 389 aa23.03■■□□□ 1.28
SHH-204ENST00000441114 CRBNQ96SW2 442 aa23.03■■□□□ 1.28
SHH-204ENST00000441114 GNL3LQ9NVN8 582 aaKnown RBP23.03■■□□□ 1.28
SHH-204ENST00000441114 APBB1O00213 710 aa23.02■■□□□ 1.28
SHH-204ENST00000441114 FKBP1AP62942 108 aaKnown RBP23.02■■□□□ 1.28
SHH-204ENST00000441114 HTRA3P83110 453 aa23.02■■□□□ 1.28
SHH-204ENST00000441114 SCARF1Q14162 830 aa23.02■■□□□ 1.28
SHH-204ENST00000441114 GORABQ5T7V8 394 aa23.02■■□□□ 1.28
SHH-204ENST00000441114 ZC3H15Q8WU90 426 aaKnown RBP23.02■■□□□ 1.28
SHH-204ENST00000441114 ASTN2O75129 1339 aaPredicted RBP23.02■■□□□ 1.28
SHH-204ENST00000441114 APLP1P51693 650 aa23.01■■□□□ 1.27
SHH-204ENST00000441114 FMR1Q06787 632 aaKnown RBP eCLIP23.01■■□□□ 1.27
SHH-204ENST00000441114 CCDC102BQ68D86 513 aa23.01■■□□□ 1.27
SHH-204ENST00000441114 GLIS2Q9BZE0 524 aaPredicted RBP23.01■■□□□ 1.27
SHH-204ENST00000441114 BCL11AQ9H165 835 aa23.01■■□□□ 1.27
SHH-204ENST00000441114 PGAP2Q9UHJ9 254 aa23.01■■□□□ 1.27
SHH-204ENST00000441114 TRAF5O00463 557 aa23■■□□□ 1.27
SHH-204ENST00000441114 NBPF9Q3BBW0 867 aa23■■□□□ 1.27
SHH-204ENST00000441114 TNNI3KQ59H18 835 aa23■■□□□ 1.27
SHH-204ENST00000441114 DCPSQ96C86 337 aaKnown RBP23■■□□□ 1.27
SHH-204ENST00000441114 TTF2Q9UNY4 1162 aaKnown RBP23■■□□□ 1.27
SHH-204ENST00000441114 SUPT16HQ9Y5B9 1047 aaKnown RBP23■■□□□ 1.27
SHH-204ENST00000441114 FPGT-TNNI3KV9GXZ4 949 aa23■■□□□ 1.27
SHH-204ENST00000441114 RBM5P52756 815 aaKnown RBP eCLIP22.99■■□□□ 1.27
SHH-204ENST00000441114 GRIK5Q16478 980 aa22.99■■□□□ 1.27
SHH-204ENST00000441114 ANGEL2Q5VTE6 544 aaKnown RBP22.99■■□□□ 1.27
SHH-204ENST00000441114 USP48Q86UV5 1035 aa22.99■■□□□ 1.27
SHH-204ENST00000441114 TBC1D22AQ8WUA7 517 aa22.99■■□□□ 1.27
SHH-204ENST00000441114 GGA3Q9NZ52 723 aa22.99■■□□□ 1.27
SHH-204ENST00000441114 PASKQ96RG2 1323 aa22.99■■□□□ 1.27
SHH-204ENST00000441114 DLGAP5Q15398 846 aa22.98■■□□□ 1.27
SHH-204ENST00000441114 HSP90AB4PQ58FF6 505 aa22.98■■□□□ 1.27
SHH-204ENST00000441114 CDC37L1Q7L3B6 337 aa22.98■■□□□ 1.27
SHH-204ENST00000441114 ERC1Q8IUD2 1116 aa22.98■■□□□ 1.27
SHH-204ENST00000441114 PCDHAC2Q9Y5I4 1007 aa22.98■■□□□ 1.27
SHH-204ENST00000441114 COL1A1P02452 1464 aaPredicted RBP22.98■■□□□ 1.27
SHH-204ENST00000441114 TRPM7Q96QT4 1865 aa22.97■■□□□ 1.27
SHH-204ENST00000441114 WNT10BO00744 389 aa22.97■■□□□ 1.27
SHH-204ENST00000441114 MMP14P50281 582 aa22.97■■□□□ 1.27
SHH-204ENST00000441114 CFAP100Q494V2 611 aa22.97■■□□□ 1.27
SHH-204ENST00000441114 DLK2Q6UY11 383 aa22.97■■□□□ 1.27
SHH-204ENST00000441114 WDR66Q8TBY9 1149 aa22.97■■□□□ 1.27
SHH-204ENST00000441114 CCDC8Q9H0W5 538 aaPredicted RBP22.97■■□□□ 1.27
SHH-204ENST00000441114 GPR108Q9NPR9 543 aa22.97■■□□□ 1.27
SHH-204ENST00000441114 DENND2AQ9ULE3 1009 aa22.97■■□□□ 1.27
SHH-204ENST00000441114 SCAF8Q9UPN6 1271 aaKnown RBP22.97■■□□□ 1.27
SHH-204ENST00000441114 KRT26Q7Z3Y9 468 aa22.96■■□□□ 1.27
SHH-204ENST00000441114 DBNDD2Q9BQY9 259 aa22.96■■□□□ 1.27
SHH-204ENST00000441114 IL1RAPL2Q9NP60 686 aa22.96■■□□□ 1.27
SHH-204ENST00000441114 ADM5C9JUS6 153 aa22.95■■□□□ 1.26
SHH-204ENST00000441114 SEMA3EO15041 775 aa22.95■■□□□ 1.26
SHH-204ENST00000441114 RASGRF1Q13972 1273 aa22.95■■□□□ 1.26
SHH-204ENST00000441114 RHPN1Q8TCX5 695 aa22.95■■□□□ 1.26
SHH-204ENST00000441114 ZNF408Q9H9D4 720 aa22.95■■□□□ 1.26
SHH-204ENST00000441114 TTC39AQ5SRH9 613 aa22.94■■□□□ 1.26
SHH-204ENST00000441114 SULF1Q8IWU6 871 aa22.94■■□□□ 1.26
SHH-204ENST00000441114 EAF2Q96CJ1 260 aaPredicted RBP22.94■■□□□ 1.26
SHH-204ENST00000441114 ECM29Q5VYK3 1845 aa22.94■■□□□ 1.26
SHH-204ENST00000441114 TMEM88BA6NKF7 163 aa22.93■■□□□ 1.26
SHH-204ENST00000441114 CCDC158Q5M9N0 1113 aa22.93■■□□□ 1.26
SHH-204ENST00000441114 AACSQ86V21 672 aa22.93■■□□□ 1.26
SHH-204ENST00000441114 PRMT6Q96LA8 375 aaPredicted RBP22.93■■□□□ 1.26
SHH-204ENST00000441114 TLR7Q9NYK1 1049 aaKnown RBP22.93■■□□□ 1.26
SHH-204ENST00000441114 PCDHB15Q9Y5E8 787 aa22.93■■□□□ 1.26
SHH-204ENST00000441114 CRKP46108 304 aa22.92■■□□□ 1.26
SHH-204ENST00000441114 KIF1BPQ96EK5 621 aa22.92■■□□□ 1.26
SHH-204ENST00000441114 ZBED3Q96IU2 234 aaPredicted RBP22.92■■□□□ 1.26
SHH-204ENST00000441114 CLRN2A0PK11 232 aa22.91■■□□□ 1.26
SHH-204ENST00000441114 RAB11FIP3O75154 756 aa22.91■■□□□ 1.26
SHH-204ENST00000441114 CELF2O95319 508 aaKnown RBP22.91■■□□□ 1.26
SHH-204ENST00000441114 PI16Q6UXB8 463 aa22.91■■□□□ 1.26
SHH-204ENST00000441114 MTMR14Q8NCE2 650 aa22.91■■□□□ 1.26
SHH-204ENST00000441114 CREBZFQ9NS37 354 aa22.91■■□□□ 1.26
SHH-204ENST00000441114 HMG20BQ9P0W2 317 aa22.91■■□□□ 1.26
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms