RNA–Protein interactions for RNA: ENST00000439235.5

CHD3-204, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 5

Gene CHD3, Length 1,263 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-204ENST00000439235 RFX7Q2KHR2 1363 aa25.12■■□□□ 1.61
CHD3-204ENST00000439235 COL1A1P02452 1464 aaPredicted RBP25.11■■□□□ 1.61
CHD3-204ENST00000439235 AOC3Q16853 763 aa25.11■■□□□ 1.61
CHD3-204ENST00000439235 KBTBD3Q8NAB2 608 aa25.11■■□□□ 1.61
CHD3-204ENST00000439235 FSD1Q9BTV5 496 aa25.11■■□□□ 1.61
CHD3-204ENST00000439235 LRRFIP1Q32MZ4 808 aaKnown RBP25.1■■□□□ 1.61
CHD3-204ENST00000439235 CASC1Q6TDU7 716 aa25.1■■□□□ 1.61
CHD3-204ENST00000439235 TICAM2Q86XR7 235 aa25.1■■□□□ 1.61
CHD3-204ENST00000439235 EDC3Q96F86 508 aaKnown RBP25.1■■□□□ 1.61
CHD3-204ENST00000439235 CYP2E1P05181 493 aaPredicted RBP25.09■■□□□ 1.61
CHD3-204ENST00000439235 PODNQ7Z5L7 613 aa25.09■■□□□ 1.61
CHD3-204ENST00000439235 FER1L6Q2WGJ9 1857 aa25.09■■□□□ 1.61
CHD3-204ENST00000439235 AKAP11Q9UKA4 1901 aa25.08■■□□□ 1.61
CHD3-204ENST00000439235 NFKBIEO00221 500 aa25.08■■□□□ 1.61
CHD3-204ENST00000439235 HIP1O00291 1037 aa25.08■■□□□ 1.61
CHD3-204ENST00000439235 CHAF1AQ13111 956 aaPredicted RBP25.08■■□□□ 1.61
CHD3-204ENST00000439235 DOK7Q18PE1 504 aa25.08■■□□□ 1.61
CHD3-204ENST00000439235 LARGE2Q8N3Y3 721 aa25.08■■□□□ 1.61
CHD3-204ENST00000439235 WDR66Q8TBY9 1149 aa25.08■■□□□ 1.61
CHD3-204ENST00000439235 ANTXR1Q9H6X2 564 aa25.08■■□□□ 1.61
CHD3-204ENST00000439235 ZNF277Q9NRM2 450 aaPredicted RBP25.08■■□□□ 1.61
CHD3-204ENST00000439235 IARSP41252 1262 aaKnown RBP25.07■■□□□ 1.6
CHD3-204ENST00000439235 ZGPATQ8N5A5 531 aaKnown RBP25.07■■□□□ 1.6
CHD3-204ENST00000439235 DDX24Q9GZR7 859 aaKnown RBP eCLIP25.07■■□□□ 1.61e-6■■■□□ 16.4
CHD3-204ENST00000439235 ECE2O60344 883 aa25.06■■□□□ 1.6
CHD3-204ENST00000439235 DBNDD1Q9H9R9 158 aa25.06■■□□□ 1.6
CHD3-204ENST00000439235 FAM205AQ6ZU69 1335 aa25.06■■□□□ 1.6
CHD3-204ENST00000439235 SALL1Q9NSC2 1324 aa25.06■■□□□ 1.6
CHD3-204ENST00000439235 MYH13Q9UKX3 1938 aa25.06■■□□□ 1.6
CHD3-204ENST00000439235 ZSCAN25Q6NSZ9 544 aa25.05■■□□□ 1.6
CHD3-204ENST00000439235 TBC1D22AQ8WUA7 517 aa25.05■■□□□ 1.6
CHD3-204ENST00000439235 PIH1D3Q9NQM4 214 aaKnown RBP25.05■■□□□ 1.6
CHD3-204ENST00000439235 DIAPH3Q9NSV4 1193 aa25.05■■□□□ 1.6
CHD3-204ENST00000439235 AK9Q5TCS8 1911 aa25.05■■□□□ 1.6
CHD3-204ENST00000439235 IGSF3O75054 1194 aa25.04■■□□□ 1.6
CHD3-204ENST00000439235 C8orf34Q49A92 452 aa25.04■■□□□ 1.6
CHD3-204ENST00000439235 TBC1D9Q6ZT07 1266 aa25.04■■□□□ 1.6
CHD3-204ENST00000439235 NIM1KQ8IY84 436 aa25.04■■□□□ 1.6
CHD3-204ENST00000439235 IDH1O75874 414 aaKnown RBP25.03■■□□□ 1.6
CHD3-204ENST00000439235 ZFYP08048 801 aaPredicted RBP25.03■■□□□ 1.6
CHD3-204ENST00000439235 CHMLP26374 656 aa25.03■■□□□ 1.6
CHD3-204ENST00000439235 MAP3K12Q12852 859 aa25.03■■□□□ 1.6
CHD3-204ENST00000439235 SPTY2D1Q68D10 685 aaPredicted RBP25.03■■□□□ 1.6
CHD3-204ENST00000439235 LRP2BPQ9P2M1 347 aa25.03■■□□□ 1.6
CHD3-204ENST00000439235 ABCF2Q9UG63 623 aa25.03■■□□□ 1.6
CHD3-204ENST00000439235 EIF5BO60841 1220 aaKnown RBP25.02■■□□□ 1.6
CHD3-204ENST00000439235 GTF2IP78347 998 aa25.02■■□□□ 1.6
CHD3-204ENST00000439235 RASSF7Q02833 373 aa25.02■■□□□ 1.6
CHD3-204ENST00000439235 ARHGAP27Q6ZUM4 889 aa25.02■■□□□ 1.6
CHD3-204ENST00000439235 RUFY2Q8WXA3 655 aa25.01■■□□□ 1.59
CHD3-204ENST00000439235 JDP2Q8WYK2 163 aa25.01■■□□□ 1.59
CHD3-204ENST00000439235 FBXW7Q969H0 707 aa25.01■■□□□ 1.59
CHD3-204ENST00000439235 JAG2Q9Y219 1238 aa25.01■■□□□ 1.59
CHD3-204ENST00000439235 DOCK2Q92608 1830 aa25■■□□□ 1.59
CHD3-204ENST00000439235 RNF113AO15541 343 aaKnown RBP25■■□□□ 1.59
CHD3-204ENST00000439235 YBX3P16989 372 aaKnown RBP eCLIP25■■□□□ 1.59
CHD3-204ENST00000439235 TMED8Q6PL24 325 aaPredicted RBP25■■□□□ 1.59
CHD3-204ENST00000439235 ERICH6Q7L0X2 663 aa25■■□□□ 1.59
CHD3-204ENST00000439235 RAI14Q9P0K7 980 aa25■■□□□ 1.59
CHD3-204ENST00000439235 FKBP1AP62942 108 aaKnown RBP24.99■■□□□ 1.59
CHD3-204ENST00000439235 MFSD14BQ5SR56 506 aa24.99■■□□□ 1.59
CHD3-204ENST00000439235 STRIP1Q5VSL9 837 aa24.99■■□□□ 1.59
CHD3-204ENST00000439235 TTLL5Q6EMB2 1281 aa24.99■■□□□ 1.59
CHD3-204ENST00000439235 ZNRF3Q9ULT6 936 aa24.99■■□□□ 1.59
CHD3-204ENST00000439235 RAD50Q92878 1312 aa24.98■■□□□ 1.59
CHD3-204ENST00000439235 USP17L3A6NCW0 530 aa24.98■■□□□ 1.59
CHD3-204ENST00000439235 USP17L4A6NCW7 530 aa24.98■■□□□ 1.59
CHD3-204ENST00000439235 LDHBP07195 334 aaKnown RBP24.98■■□□□ 1.59
CHD3-204ENST00000439235 ADD2P35612 726 aa24.98■■□□□ 1.59
CHD3-204ENST00000439235 SLC9C2Q5TAH2 1124 aa24.98■■□□□ 1.59
CHD3-204ENST00000439235 USP17L1Q7RTZ2 530 aa24.98■■□□□ 1.59
CHD3-204ENST00000439235 SUGT1Q9Y2Z0 365 aa24.98■■□□□ 1.59
CHD3-204ENST00000439235 MAST2Q6P0Q8 1798 aa24.98■■□□□ 1.59
CHD3-204ENST00000439235 COL4A5P29400 1685 aa24.97■■□□□ 1.59
CHD3-204ENST00000439235 PDE6AP16499 860 aa24.97■■□□□ 1.59
CHD3-204ENST00000439235 NMIQ13287 307 aaPredicted RBP24.97■■□□□ 1.59
CHD3-204ENST00000439235 UBE3CQ15386 1083 aa24.97■■□□□ 1.59
CHD3-204ENST00000439235 GPR162Q16538 588 aa24.97■■□□□ 1.59
CHD3-204ENST00000439235 DZIP1Q86YF9 867 aaKnown RBP24.97■■□□□ 1.59
CHD3-204ENST00000439235 BACH2Q9BYV9 841 aa24.97■■□□□ 1.59
CHD3-204ENST00000439235 YDJCA8MPS7 323 aa24.96■■□□□ 1.59
CHD3-204ENST00000439235 LMNB1P20700 586 aa24.96■■□□□ 1.59
CHD3-204ENST00000439235 PRDX5P30044 214 aa24.96■■□□□ 1.59
CHD3-204ENST00000439235 CWC27Q6UX04 472 aaKnown RBP24.96■■□□□ 1.59
CHD3-204ENST00000439235 APPBP2Q92624 585 aa24.96■■□□□ 1.59
CHD3-204ENST00000439235 ESYT1Q9BSJ8 1104 aa24.96■■□□□ 1.59
CHD3-204ENST00000439235 ZMYM1Q5SVZ6 1142 aa24.95■■□□□ 1.58
CHD3-204ENST00000439235 DACT2Q5SW24 774 aa24.95■■□□□ 1.58
CHD3-204ENST00000439235 MAGEB6Q8N7X4 407 aa24.95■■□□□ 1.58
CHD3-204ENST00000439235 HELLSQ9NRZ9 838 aa24.95■■□□□ 1.58
CHD3-204ENST00000439235 MAST3O60307 1309 aa24.94■■□□□ 1.58
CHD3-204ENST00000439235 ZNF532Q9HCE3 1301 aa24.94■■□□□ 1.58
CHD3-204ENST00000439235 GRIN3BO60391 1043 aa24.94■■□□□ 1.58
CHD3-204ENST00000439235 GSTO1P78417 241 aa24.94■■□□□ 1.58
CHD3-204ENST00000439235 NAA16Q6N069 864 aaPredicted RBP24.94■■□□□ 1.58
CHD3-204ENST00000439235 FAM227BQ96M60 508 aa24.94■■□□□ 1.58
CHD3-204ENST00000439235 MYO3BQ8WXR4 1341 aa24.93■■□□□ 1.58
CHD3-204ENST00000439235 A0A0D9SFI3 127 aa24.93■■□□□ 1.58
CHD3-204ENST00000439235 SGSM2O43147 1006 aa24.93■■□□□ 1.58
CHD3-204ENST00000439235 MECOMQ03112 1051 aa24.93■■□□□ 1.58
Retrieved 100 of 20,778 RNA–protein pairs in 43.3 ms