RNA–Protein interactions for RNA: ENST00000438120.5

PTPRF-209, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PTPRF, Length 6,377 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-209ENST00000438120 GIMAP7Q8NHV1 300 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 KLHDC4Q8TBB5 520 aa19.5■□□□□ 0.71
PTPRF-209ENST00000438120 GNPATO15228 680 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 EEF2P13639 858 aaKnown RBP19.49■□□□□ 0.71
PTPRF-209ENST00000438120 TIMM10P62072 90 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 PLEKHM2Q8IWE5 1019 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 CAPZA3Q96KX2 299 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 FERMT1Q9BQL6 677 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 PAXBP1Q9Y5B6 917 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 A0A1W2PRG0 241 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 MICALCLQ6ZW33 695 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 RUFY3Q7L099 469 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 DCAF5Q96JK2 942 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 PTPRKQ15262 1439 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 CARD14Q9BXL6 1004 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 CTAGE15A4D2H0 777 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 CTAGE8P0CG41 777 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 TYRO3Q06418 890 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 USP37Q86T82 979 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 CTAGE6Q86UF2 777 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 CTAGE4Q8IX94 777 aa19.49■□□□□ 0.71
PTPRF-209ENST00000438120 UBXN1Q04323 297 aa19.48■□□□□ 0.71
PTPRF-209ENST00000438120 NOLC1Q14978 699 aaKnown RBP eCLIP19.48■□□□□ 0.717e-7■■□□□ 12.4
PTPRF-209ENST00000438120 CCDC171Q6TFL3 1326 aa19.48■□□□□ 0.71
PTPRF-209ENST00000438120 BTG4Q9NY30 223 aa19.48■□□□□ 0.71
PTPRF-209ENST00000438120 CHMLP26374 656 aa19.48■□□□□ 0.71
PTPRF-209ENST00000438120 EIF6P56537 245 aaKnown RBP19.48■□□□□ 0.71
PTPRF-209ENST00000438120 SPAG1Q07617 926 aa19.48■□□□□ 0.71
PTPRF-209ENST00000438120 KARSQ15046 597 aaKnown RBP19.48■□□□□ 0.71
PTPRF-209ENST00000438120 DHX32Q7L7V1 743 aaKnown RBP19.48■□□□□ 0.71
PTPRF-209ENST00000438120 A2MP01023 1474 aa19.48■□□□□ 0.71
PTPRF-209ENST00000438120 TSNARE1Q96NA8 513 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 SYCP2Q9BX26 1530 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 MCM6Q14566 821 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 CALML3P27482 149 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 TRAF1Q13077 416 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 RAB3GAP1Q15042 981 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 ZNF174Q15697 407 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 ASXL2Q76L83 1435 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 JDP2Q8WYK2 163 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 NPATQ14207 1427 aa19.47■□□□□ 0.71
PTPRF-209ENST00000438120 PRAG1Q86YV5 1406 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 LZTFL1Q9NQ48 299 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 KCNA6P17658 529 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 CKAP4Q07065 602 aaKnown RBP19.46■□□□□ 0.71
PTPRF-209ENST00000438120 BMS1Q14692 1282 aaKnown RBP19.46■□□□□ 0.71
PTPRF-209ENST00000438120 GSTA5Q7RTV2 222 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 IMPG2Q9BZV3 1241 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 ZBTB40Q9NUA8 1239 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 SOS1Q07889 1333 aaPredicted RBP19.46■□□□□ 0.71
PTPRF-209ENST00000438120 SEC24BO95487 1268 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 XRCC6P12956 609 aaKnown RBP eCLIP19.46■□□□□ 0.71
PTPRF-209ENST00000438120 ARL1P40616 181 aaPredicted RBP19.46■□□□□ 0.71
PTPRF-209ENST00000438120 CCDC50Q8IVM0 306 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 CEP63Q96MT8 703 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 GPCPD1Q9NPB8 672 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 GUCA1BQ9UMX6 200 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 DTNBO60941 627 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 ABCC1P33527 1531 aa19.46■□□□□ 0.71
PTPRF-209ENST00000438120 A0A1W2PP64 1363 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 ZNF594Q96JF6 807 aaPredicted RBP19.45■□□□□ 0.7
PTPRF-209ENST00000438120 C19orf44Q9H6X5 657 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 MAP3K19Q56UN5 1328 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 KAT6BQ8WYB5 2073 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 VWA3AA6NCI4 1184 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 DTHD1Q6ZMT9 781 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 OTUD7AQ8TE49 926 aaPredicted RBP19.45■□□□□ 0.7
PTPRF-209ENST00000438120 PLVAPQ9BX97 442 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 B4E1Z4 1266 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 CCDC155Q8N6L0 562 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 PLCB3Q01970 1234 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 CCDC24Q8N4L8 307 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 SELENOOQ9BVL4 669 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 POLR3AO14802 1390 aaPredicted RBP19.45■□□□□ 0.7
PTPRF-209ENST00000438120 TACC1O75410 805 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 LETM2Q2VYF4 491 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 IFNKQ9P0W0 207 aa19.45■□□□□ 0.7
PTPRF-209ENST00000438120 A0A1B0GVL5 298 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 PABPN1LA6NDY0 278 aaKnown RBP19.44■□□□□ 0.7
PTPRF-209ENST00000438120 ITGA6P23229 1130 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 SNX21Q969T3 373 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 CCDC42Q96M95 316 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 ARMT1Q9H993 441 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 PLCG2P16885 1265 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 MAP3K9P80192 1104 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 BBXQ8WY36 941 aaPredicted RBP19.44■□□□□ 0.7
PTPRF-209ENST00000438120 ANKRD2Q9GZV1 360 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 OTUD6BQ8N6M0 293 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 PCDH11XQ9BZA7 1347 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 PCDH11YQ9BZA8 1340 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 BACH1O14867 736 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 SPECC1LQ69YQ0 1117 aa19.44■□□□□ 0.7
PTPRF-209ENST00000438120 SRRTQ9BXP5 876 aaKnown RBP19.44■□□□□ 0.7
PTPRF-209ENST00000438120 A0A1B0GUL7 405 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 PARP1P09874 1014 aaKnown RBP19.43■□□□□ 0.7
PTPRF-209ENST00000438120 DCAF17Q5H9S7 520 aaPredicted RBP19.43■□□□□ 0.7
PTPRF-209ENST00000438120 PARD3Q8TEW0 1356 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 TRAPPC3LQ5T215 181 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 NEK11Q8NG66 645 aa19.43■□□□□ 0.7
PTPRF-209ENST00000438120 DUOX2Q9NRD8 1548 aa19.43■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 18.7 ms