RNA–Protein interactions for RNA: ENST00000433762.1

COL6A3-207, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best)

Gene COL6A3, Length 2,379 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-207ENST00000433762 POLR3EQ9NVU0 708 aa15.98■□□□□ 0.15
COL6A3-207ENST00000433762 RBM10P98175 930 aaKnown RBP15.97■□□□□ 0.15
COL6A3-207ENST00000433762 TOM1L2Q6ZVM7 507 aa15.97■□□□□ 0.15
COL6A3-207ENST00000433762 MB21D2Q8IYB1 491 aaPredicted RBP15.97■□□□□ 0.15
COL6A3-207ENST00000433762 SPC24Q8NBT2 197 aa15.97■□□□□ 0.15
COL6A3-207ENST00000433762 BPIFA3Q9BQP9 254 aa15.97■□□□□ 0.15
COL6A3-207ENST00000433762 LRRC2Q9BYS8 371 aa15.97■□□□□ 0.15
COL6A3-207ENST00000433762 NAT10Q9H0A0 1025 aaKnown RBP15.97■□□□□ 0.15
COL6A3-207ENST00000433762 CCDC186Q7Z3E2 898 aa15.97■□□□□ 0.15
COL6A3-207ENST00000433762 ZBTB38Q8NAP3 1195 aaPredicted RBP15.97■□□□□ 0.15
COL6A3-207ENST00000433762 XAGE2Q96GT9 111 aa15.97■□□□□ 0.15
COL6A3-207ENST00000433762 LRP5O75197 1615 aa15.96■□□□□ 0.15
COL6A3-207ENST00000433762 RIC1Q4ADV7 1423 aa15.96■□□□□ 0.15
COL6A3-207ENST00000433762 CTIFO43310 598 aaKnown RBP15.96■□□□□ 0.15
COL6A3-207ENST00000433762 HSP90AB3PQ58FF7 597 aa15.96■□□□□ 0.15
COL6A3-207ENST00000433762 NCOA7Q8NI08 942 aa15.96■□□□□ 0.15
COL6A3-207ENST00000433762 MRPS27Q92552 414 aaKnown RBP15.96■□□□□ 0.15
COL6A3-207ENST00000433762 DDX24Q9GZR7 859 aaKnown RBP eCLIP15.96■□□□□ 0.15
COL6A3-207ENST00000433762 ZBTB3Q9H5J0 574 aa15.96■□□□□ 0.15
COL6A3-207ENST00000433762 KCND1Q9NSA2 647 aa15.96■□□□□ 0.15
COL6A3-207ENST00000433762 TTF1Q15361 905 aaPredicted RBP15.95■□□□□ 0.14
COL6A3-207ENST00000433762 KIF6Q6ZMV9 814 aa15.95■□□□□ 0.14
COL6A3-207ENST00000433762 ILDR1Q86SU0 546 aaPredicted RBP15.95■□□□□ 0.14
COL6A3-207ENST00000433762 CEP57L1Q8IYX8 460 aa15.95■□□□□ 0.14
COL6A3-207ENST00000433762 CLIP2Q9UDT6 1046 aa15.95■□□□□ 0.14
COL6A3-207ENST00000433762 ITGB4P16144 1822 aa15.95■□□□□ 0.14
COL6A3-207ENST00000433762 ZMYM6O95789 1325 aa15.95■□□□□ 0.14
COL6A3-207ENST00000433762 FDPSP14324 419 aaKnown RBP15.95■□□□□ 0.14
COL6A3-207ENST00000433762 GORABQ5T7V8 394 aa15.95■□□□□ 0.14
COL6A3-207ENST00000433762 FMR1NBQ8N0W7 255 aaPredicted RBP15.95■□□□□ 0.14
COL6A3-207ENST00000433762 GOLPH3LQ9H4A5 285 aa15.95■□□□□ 0.14
COL6A3-207ENST00000433762 FOXP2O15409 715 aa15.94■□□□□ 0.14
COL6A3-207ENST00000433762 RBM6P78332 1123 aaKnown RBP15.94■□□□□ 0.14
COL6A3-207ENST00000433762 CCT2P78371 535 aaKnown RBP15.94■□□□□ 0.14
COL6A3-207ENST00000433762 DRC7Q8IY82 874 aa15.94■□□□□ 0.14
COL6A3-207ENST00000433762 MPNDQ8N594 471 aa15.94■□□□□ 0.14
COL6A3-207ENST00000433762 FBXO18Q8NFZ0 1043 aa15.94■□□□□ 0.14
COL6A3-207ENST00000433762 ZNF594Q96JF6 807 aaPredicted RBP15.94■□□□□ 0.14
COL6A3-207ENST00000433762 PUS3Q9BZE2 481 aaKnown RBP15.94■□□□□ 0.14
COL6A3-207ENST00000433762 PAXBP1Q9Y5B6 917 aa15.94■□□□□ 0.14
COL6A3-207ENST00000433762 DOCK2Q92608 1830 aa15.94■□□□□ 0.14
COL6A3-207ENST00000433762 IFIT5Q13325 482 aaKnown RBP15.94■□□□□ 0.14
COL6A3-207ENST00000433762 C17orf53Q8N3J3 647 aaPredicted RBP15.94■□□□□ 0.14
COL6A3-207ENST00000433762 FSIP1Q8NA03 581 aa15.94■□□□□ 0.14
COL6A3-207ENST00000433762 LINC00301Q8NCQ3 95 aa15.94■□□□□ 0.14
COL6A3-207ENST00000433762 CCDC94Q9BW85 323 aaPredicted RBP15.94■□□□□ 0.14
COL6A3-207ENST00000433762 NHSL1Q5SYE7 1610 aa15.93■□□□□ 0.14
COL6A3-207ENST00000433762 PRC1O43663 620 aa15.93■□□□□ 0.14
COL6A3-207ENST00000433762 ME1P48163 572 aa15.93■□□□□ 0.14
COL6A3-207ENST00000433762 C8orf76Q96K31 380 aa15.93■□□□□ 0.14
COL6A3-207ENST00000433762 ROBO1Q9Y6N7 1651 aa15.93■□□□□ 0.14
COL6A3-207ENST00000433762 SMTNL1A8MU46 457 aa15.93■□□□□ 0.14
COL6A3-207ENST00000433762 FGAP02671 866 aa15.93■□□□□ 0.14
COL6A3-207ENST00000433762 GIGYF2Q6Y7W6 1299 aaKnown RBP15.93■□□□□ 0.14
COL6A3-207ENST00000433762 RALYLQ86SE5 291 aaKnown RBP15.93■□□□□ 0.14
COL6A3-207ENST00000433762 NCOA5Q9HCD5 579 aaKnown RBP15.93■□□□□ 0.14
COL6A3-207ENST00000433762 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.93■□□□□ 0.14
COL6A3-207ENST00000433762 MAP3K15Q6ZN16 1313 aa15.93■□□□□ 0.14
COL6A3-207ENST00000433762 PLCH1Q4KWH8 1693 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 BECN2A8MW95 431 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 GSDMDP57764 484 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 FKBP4Q02790 459 aaKnown RBP eCLIP15.92■□□□□ 0.14
COL6A3-207ENST00000433762 UBE3CQ15386 1083 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 C11orf57Q6ZUT1 292 aaPredicted RBP15.92■□□□□ 0.14
COL6A3-207ENST00000433762 TMOD3Q9NYL9 352 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 IMPACTQ9P2X3 320 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 PCDHA7Q9UN72 937 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 HPS5Q9UPZ3 1129 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 RIPOR2Q9Y4F9 1068 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 CHD4Q14839 1912 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 CDKL5O76039 1030 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 STARD3NLO95772 234 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 TIGD1Q96MW7 591 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 TIAM2Q8IVF5 1701 aa15.92■□□□□ 0.14
COL6A3-207ENST00000433762 NUP98P52948 1817 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 ZNF213O14771 459 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 TOM1O60784 492 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 ATP2B3Q16720 1220 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 WASHC4Q2M389 1173 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 TAF7LQ5H9L4 462 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 MYSM1Q5VVJ2 828 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 TTLL5Q6EMB2 1281 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 DHX40Q8IX18 779 aaKnown RBP15.91■□□□□ 0.14
COL6A3-207ENST00000433762 ANKRD7Q92527 254 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 AK7Q96M32 723 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 ECM29Q5VYK3 1845 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 KLF18A0A0U1RQI7 1052 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 ADORA1P30542 326 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 ADD2P35612 726 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 KCNJ6P48051 423 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 ALX1Q15699 326 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 LRRC8AQ8IWT6 810 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 ZNF710Q8N1W2 664 aa15.91■□□□□ 0.14
COL6A3-207ENST00000433762 ORC3Q9UBD5 711 aaPredicted RBP15.91■□□□□ 0.14
COL6A3-207ENST00000433762 GOLGA8BA8MQT2 603 aa15.9■□□□□ 0.14
COL6A3-207ENST00000433762 RIOK3O14730 519 aaKnown RBP15.9■□□□□ 0.14
COL6A3-207ENST00000433762 GPAA1O43292 621 aa15.9■□□□□ 0.14
COL6A3-207ENST00000433762 ANTXR2P58335 489 aa15.9■□□□□ 0.14
COL6A3-207ENST00000433762 STK38Q15208 465 aa15.9■□□□□ 0.14
COL6A3-207ENST00000433762 SLFNL1Q499Z3 407 aa15.9■□□□□ 0.14
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms