RNA–Protein interactions for RNA: ENST00000430086.1

CCDC88A-206, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 582 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-206ENST00000430086 DCAF5Q96JK2 942 aa9.93□□□□□ -0.82
CCDC88A-206ENST00000430086 FAM229AH3BQW9 127 aa9.92□□□□□ -0.82
CCDC88A-206ENST00000430086 PIP4K2BP78356 416 aa9.92□□□□□ -0.82
CCDC88A-206ENST00000430086 NXPE4Q6UWF7 544 aa9.92□□□□□ -0.82
CCDC88A-206ENST00000430086 DUSP9Q99956 384 aaKnown RBP9.92□□□□□ -0.82
CCDC88A-206ENST00000430086 OSBPL7Q9BZF2 842 aa9.92□□□□□ -0.82
CCDC88A-206ENST00000430086 OSGEPQ9NPF4 335 aa9.92□□□□□ -0.82
CCDC88A-206ENST00000430086 TM4SF5O14894 197 aa9.91□□□□□ -0.82
CCDC88A-206ENST00000430086 FSCN2O14926 492 aa9.91□□□□□ -0.82
CCDC88A-206ENST00000430086 XRCC5P13010 732 aaKnown RBP9.91□□□□□ -0.82
CCDC88A-206ENST00000430086 KLHL23Q8NBE8 558 aa9.91□□□□□ -0.82
CCDC88A-206ENST00000430086 BCL2L13Q9BXK5 485 aa9.91□□□□□ -0.82
CCDC88A-206ENST00000430086 CLEC4MQ9H2X3 399 aaPredicted RBP9.91□□□□□ -0.82
CCDC88A-206ENST00000430086 ZNF576Q9H609 170 aa9.91□□□□□ -0.82
CCDC88A-206ENST00000430086 ZFYVE1Q9HBF4 777 aa9.91□□□□□ -0.82
CCDC88A-206ENST00000430086 DLL1O00548 723 aa9.9□□□□□ -0.82
CCDC88A-206ENST00000430086 ESRRAP11474 423 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-206ENST00000430086 CDC25BP30305 580 aa9.9□□□□□ -0.82
CCDC88A-206ENST00000430086 IKBKEQ14164 716 aa9.9□□□□□ -0.82
CCDC88A-206ENST00000430086 RPS26P11Q5JNZ5 115 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-206ENST00000430086 TXNDC11Q6PKC3 985 aa9.9□□□□□ -0.82
CCDC88A-206ENST00000430086 SOX17Q9H6I2 414 aaPredicted RBP9.9□□□□□ -0.82
CCDC88A-206ENST00000430086 C12orf49Q9H741 205 aa9.9□□□□□ -0.82
CCDC88A-206ENST00000430086 CCDC9Q9Y3X0 531 aaKnown RBP9.9□□□□□ -0.82
CCDC88A-206ENST00000430086 KRBA1A5PL33 1030 aa9.89□□□□□ -0.83
CCDC88A-206ENST00000430086 SOX1O00570 391 aaPredicted RBP9.89□□□□□ -0.83
CCDC88A-206ENST00000430086 GDF11O95390 407 aa9.89□□□□□ -0.83
CCDC88A-206ENST00000430086 TAGLNQ01995 201 aaKnown RBP9.89□□□□□ -0.83
CCDC88A-206ENST00000430086 TMEM151AQ8N4L1 468 aa9.89□□□□□ -0.83
CCDC88A-206ENST00000430086 GALNT11Q8NCW6 608 aa9.89□□□□□ -0.83
CCDC88A-206ENST00000430086 SEC31BQ9NQW1 1179 aa9.89□□□□□ -0.83
CCDC88A-206ENST00000430086 PARP2Q9UGN5 583 aa9.89□□□□□ -0.83
CCDC88A-206ENST00000430086 FCGRTP55899 365 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 DAB2P98082 770 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 PCDH1Q08174 1060 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 GRIK4Q16099 956 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 IGF2-ASQ6U949 168 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 DTHD1Q6ZMT9 781 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 NACC1Q96RE7 527 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 RNF19AQ9NV58 838 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 FAM8A1Q9UBU6 413 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 AK5Q9Y6K8 562 aa9.88□□□□□ -0.83
CCDC88A-206ENST00000430086 EIF4EBP3O60516 100 aaPredicted RBP9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 GSTT1P30711 240 aa9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 ARL4DP49703 201 aa9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 C19orf57Q0VDD7 668 aa9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 ZNF423Q2M1K9 1284 aa9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 ZNF326Q5BKZ1 582 aaKnown RBP9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 TMC4Q7Z404 712 aa9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 C3orf58Q8NDZ4 430 aa9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 RGS22Q8NE09 1264 aa9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 LENG1Q96BZ8 264 aaPredicted RBP9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 CARD10Q9BWT7 1032 aa9.87□□□□□ -0.83
CCDC88A-206ENST00000430086 APBA3O96018 575 aa9.86□□□□□ -0.83
CCDC88A-206ENST00000430086 B3GALT4O96024 378 aa9.86□□□□□ -0.83
CCDC88A-206ENST00000430086 SELPP16109 830 aa9.86□□□□□ -0.83
CCDC88A-206ENST00000430086 CD68P34810 354 aaPredicted RBP9.86□□□□□ -0.83
CCDC88A-206ENST00000430086 XPCQ01831 940 aaPredicted RBP9.86□□□□□ -0.83
CCDC88A-206ENST00000430086 SUZ12Q15022 739 aaKnown RBP9.86□□□□□ -0.83
CCDC88A-206ENST00000430086 GIPC2Q8TF65 315 aa9.86□□□□□ -0.83
CCDC88A-206ENST00000430086 KLHDC7BQ96G42 594 aa9.86□□□□□ -0.83
CCDC88A-206ENST00000430086 C9orf172C9J069 976 aa9.85□□□□□ -0.83
CCDC88A-206ENST00000430086 EIF4BP23588 611 aaKnown RBP9.85□□□□□ -0.83
CCDC88A-206ENST00000430086 PSMD2Q13200 908 aa9.85□□□□□ -0.83
CCDC88A-206ENST00000430086 ANKRD24Q8TF21 1146 aa9.85□□□□□ -0.83
CCDC88A-206ENST00000430086 SLC7A3Q8WY07 619 aa9.85□□□□□ -0.83
CCDC88A-206ENST00000430086 RBM47A0AV96 593 aaKnown RBP9.84□□□□□ -0.83
CCDC88A-206ENST00000430086 FOXD4L6Q3SYB3 417 aaPredicted RBP9.84□□□□□ -0.83
CCDC88A-206ENST00000430086 HGSNATQ68CP4 663 aa9.84□□□□□ -0.83
CCDC88A-206ENST00000430086 FOXD4L3Q6VB84 417 aaPredicted RBP9.84□□□□□ -0.83
CCDC88A-206ENST00000430086 PODXL2Q9NZ53 605 aa9.84□□□□□ -0.83
CCDC88A-206ENST00000430086 PPM1HQ9ULR3 514 aa9.84□□□□□ -0.83
CCDC88A-206ENST00000430086 USP17L7P0C7H9 530 aa9.83□□□□□ -0.84
CCDC88A-206ENST00000430086 ZNF16P17020 682 aaPredicted RBP9.83□□□□□ -0.84
CCDC88A-206ENST00000430086 ITGAEP38570 1179 aa9.83□□□□□ -0.84
CCDC88A-206ENST00000430086 NRG1Q02297 640 aaPredicted RBP9.83□□□□□ -0.84
CCDC88A-206ENST00000430086 FAAP100Q0VG06 881 aa9.83□□□□□ -0.84
CCDC88A-206ENST00000430086 SHISA2Q6UWI4 295 aa9.83□□□□□ -0.84
CCDC88A-206ENST00000430086 MRPL18Q9H0U6 180 aaKnown RBP9.83□□□□□ -0.84
CCDC88A-206ENST00000430086 KCNK4Q9NYG8 393 aa9.83□□□□□ -0.84
CCDC88A-206ENST00000430086 AKAP2Q9Y2D5 859 aa9.83□□□□□ -0.84
CCDC88A-206ENST00000430086 CD163Q86VB7 1156 aa9.82□□□□□ -0.84
CCDC88A-206ENST00000430086 TMEM130Q8N3G9 435 aa9.82□□□□□ -0.84
CCDC88A-206ENST00000430086 DDX54Q8TDD1 881 aaKnown RBP9.82□□□□□ -0.84
CCDC88A-206ENST00000430086 SORBS3O60504 671 aa9.81□□□□□ -0.84
CCDC88A-206ENST00000430086 ADAM11O75078 769 aa9.81□□□□□ -0.84
CCDC88A-206ENST00000430086 CHRNA4P43681 627 aa9.81□□□□□ -0.84
CCDC88A-206ENST00000430086 ADGRE1Q14246 886 aa9.81□□□□□ -0.84
CCDC88A-206ENST00000430086 FOXD4L4Q8WXT5 416 aaPredicted RBP9.81□□□□□ -0.84
CCDC88A-206ENST00000430086 C1QTNF9BB2RNN3 333 aa9.8□□□□□ -0.84
CCDC88A-206ENST00000430086 DDX3YO15523 660 aaKnown RBP9.8□□□□□ -0.84
CCDC88A-206ENST00000430086 ITGB2P05107 769 aa9.8□□□□□ -0.84
CCDC88A-206ENST00000430086 GSTM4Q03013 218 aa9.8□□□□□ -0.84
CCDC88A-206ENST00000430086 PLA2G4EQ3MJ16 856 aa9.8□□□□□ -0.84
CCDC88A-206ENST00000430086 FAM161BQ96MY7 647 aa9.8□□□□□ -0.84
CCDC88A-206ENST00000430086 NRSN2Q9GZP1 204 aa9.8□□□□□ -0.84
CCDC88A-206ENST00000430086 BCL11AQ9H165 835 aa9.79□□□□□ -0.84
CCDC88A-206ENST00000430086 TMEM39AQ9NV64 488 aa9.79□□□□□ -0.84
CCDC88A-206ENST00000430086 USP21Q9UK80 565 aa9.79□□□□□ -0.84
CCDC88A-206ENST00000430086 NLRP12P59046 1061 aa9.78□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms