RNA–Protein interactions for RNA: ENST00000427526.6

LIG1-202, Transcript of DNA ligase 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIG1, Length 3,027 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-202ENST00000427526 ZNF274Q96GC6 653 aaPredicted RBP16.76■□□□□ 0.27
LIG1-202ENST00000427526 DNAJC25Q9H1X3 360 aa16.76■□□□□ 0.27
LIG1-202ENST00000427526 SPEF2Q9C093 1822 aa16.76■□□□□ 0.27
LIG1-202ENST00000427526 IFIT1P09914 478 aaKnown RBP16.76■□□□□ 0.27
LIG1-202ENST00000427526 PDIA3P30101 505 aaKnown RBP16.76■□□□□ 0.27
LIG1-202ENST00000427526 CCDC57Q2TAC2 916 aa16.75■□□□□ 0.27
LIG1-202ENST00000427526 ATL3Q6DD88 541 aa16.75■□□□□ 0.27
LIG1-202ENST00000427526 LRP6O75581 1613 aa16.75■□□□□ 0.27
LIG1-202ENST00000427526 CCT2P78371 535 aaKnown RBP16.75■□□□□ 0.27
LIG1-202ENST00000427526 SNW1Q13573 536 aaKnown RBP16.75■□□□□ 0.27
LIG1-202ENST00000427526 CCDC186Q7Z3E2 898 aa16.75■□□□□ 0.27
LIG1-202ENST00000427526 FTOQ9C0B1 505 aaKnown RBP eCLIP16.75■□□□□ 0.27
LIG1-202ENST00000427526 ATP6V1AP38606 617 aa16.75■□□□□ 0.27
LIG1-202ENST00000427526 EVCP57679 992 aa16.75■□□□□ 0.27
LIG1-202ENST00000427526 CEBPZQ03701 1054 aaKnown RBP16.75■□□□□ 0.27
LIG1-202ENST00000427526 DZIP3Q86Y13 1208 aaKnown RBP16.75■□□□□ 0.27
LIG1-202ENST00000427526 NCOA5Q9HCD5 579 aaKnown RBP16.75■□□□□ 0.27
LIG1-202ENST00000427526 M0R2C6 588 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 KCNQ2O43526 872 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 IQCB1Q15051 598 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 ILDR1Q86SU0 546 aaPredicted RBP16.74■□□□□ 0.27
LIG1-202ENST00000427526 USP28Q96RU2 1077 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 TRIM5Q9C035 493 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 NRBP1Q9UHY1 535 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 KIF3AQ9Y496 699 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 NRAPQ86VF7 1730 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 CCAR1Q8IX12 1150 aaKnown RBP16.74■□□□□ 0.27
LIG1-202ENST00000427526 ZNF710Q8N1W2 664 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 OSBP2Q969R2 916 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 C8orf37Q96NL8 207 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 GOLPH3LQ9H4A5 285 aa16.74■□□□□ 0.27
LIG1-202ENST00000427526 CTAGE5O15320 804 aa16.73■□□□□ 0.27
LIG1-202ENST00000427526 IL6STP40189 918 aaPredicted RBP16.73■□□□□ 0.27
LIG1-202ENST00000427526 FAM98CQ17RN3 349 aaKnown RBP16.73■□□□□ 0.27
LIG1-202ENST00000427526 INTS5Q6P9B9 1019 aaKnown RBP16.73■□□□□ 0.27
LIG1-202ENST00000427526 BARGINQ6ZT62 677 aa16.73■□□□□ 0.27
LIG1-202ENST00000427526 ENGASEQ8NFI3 743 aa16.73■□□□□ 0.27
LIG1-202ENST00000427526 SLIT2O94813 1529 aa16.73■□□□□ 0.27
LIG1-202ENST00000427526 FOXP2O15409 715 aa16.73■□□□□ 0.27
LIG1-202ENST00000427526 CSF1RP07333 972 aa16.73■□□□□ 0.27
LIG1-202ENST00000427526 TTLL5Q6EMB2 1281 aa16.73■□□□□ 0.27
LIG1-202ENST00000427526 TSC1Q92574 1164 aa16.73■□□□□ 0.27
LIG1-202ENST00000427526 DOT1LQ8TEK3 1739 aa16.73■□□□□ 0.27
LIG1-202ENST00000427526 LOC102724428A0A0B4J2F2 783 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 SIK1P57059 783 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 ITPK1Q13572 414 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 CHST3Q7LGC8 479 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 NGLY1Q96IV0 654 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 PLA2G12BQ9BX93 195 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 FDPSP14324 419 aaKnown RBP16.72■□□□□ 0.27
LIG1-202ENST00000427526 TRMT112Q9UI30 125 aaKnown RBP16.72■□□□□ 0.27
LIG1-202ENST00000427526 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.72■□□□□ 0.27
LIG1-202ENST00000427526 WNK3Q9BYP7 1800 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 CDC25BP30305 580 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 CRKLP46109 303 aaKnown RBP16.72■□□□□ 0.27
LIG1-202ENST00000427526 FOSBP53539 338 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 LRMPQ12912 555 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 HSP90AB3PQ58FF7 597 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 ZSCAN25Q6NSZ9 544 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 SARM1Q6SZW1 724 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 ZNF396Q96N95 335 aaPredicted RBP16.72■□□□□ 0.27
LIG1-202ENST00000427526 CEP126Q9P2H0 1117 aa16.72■□□□□ 0.27
LIG1-202ENST00000427526 CARMIL3Q8ND23 1372 aa16.71■□□□□ 0.27
LIG1-202ENST00000427526 IFIT5Q13325 482 aaKnown RBP16.71■□□□□ 0.27
LIG1-202ENST00000427526 C11orf57Q6ZUT1 292 aaPredicted RBP16.71■□□□□ 0.27
LIG1-202ENST00000427526 EIF5P55010 431 aaKnown RBP16.71■□□□□ 0.27
LIG1-202ENST00000427526 TAF7LQ5H9L4 462 aa16.71■□□□□ 0.27
LIG1-202ENST00000427526 TTLL11Q8NHH1 800 aa16.71■□□□□ 0.27
LIG1-202ENST00000427526 CHMP4CQ96CF2 233 aa16.71■□□□□ 0.27
LIG1-202ENST00000427526 GREM2Q9H772 168 aa16.71■□□□□ 0.27
LIG1-202ENST00000427526 UBN2Q6ZU65 1347 aa16.71■□□□□ 0.26
LIG1-202ENST00000427526 NWD2Q9ULI1 1742 aa16.7■□□□□ 0.26
LIG1-202ENST00000427526 ERVV-1B6SEH8 477 aa16.7■□□□□ 0.26
LIG1-202ENST00000427526 IRS4O14654 1257 aaPredicted RBP16.7■□□□□ 0.26
LIG1-202ENST00000427526 DRC7Q8IY82 874 aa16.7■□□□□ 0.26
LIG1-202ENST00000427526 CCDC87Q9NVE4 849 aa16.7■□□□□ 0.26
LIG1-202ENST00000427526 FBXO3Q9UK99 471 aa16.7■□□□□ 0.26
LIG1-202ENST00000427526 FKBP4Q02790 459 aaKnown RBP eCLIP16.7■□□□□ 0.26
LIG1-202ENST00000427526 FAM160A1Q05DH4 1040 aa16.7■□□□□ 0.26
LIG1-202ENST00000427526 PPFIA3O75145 1194 aa16.7■□□□□ 0.26
LIG1-202ENST00000427526 STX1AQ16623 288 aa16.7■□□□□ 0.26
LIG1-202ENST00000427526 CLIP2Q9UDT6 1046 aa16.7■□□□□ 0.26
LIG1-202ENST00000427526 CDHR2Q9BYE9 1310 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 FAM177BA6PVY3 158 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 ADORA1P30542 326 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 XAGE2Q96GT9 111 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 GPHNQ9NQX3 736 aaPredicted RBP16.69■□□□□ 0.26
LIG1-202ENST00000427526 CTNNA3Q9UI47 895 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 RIOK3O14730 519 aaKnown RBP16.69■□□□□ 0.26
LIG1-202ENST00000427526 ZFYP08048 801 aaPredicted RBP16.69■□□□□ 0.26
LIG1-202ENST00000427526 ITGA6P23229 1130 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 GUCY1B3Q02153 619 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 CCDC144BQ3MJ40 725 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 CCDC158Q5M9N0 1113 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 CCDC73Q6ZRK6 1079 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 CCDC144CPQ8IYA2 1237 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 ZNF34Q8IZ26 560 aa16.69■□□□□ 0.26
LIG1-202ENST00000427526 CACTINQ8WUQ7 758 aaKnown RBP16.68■□□□□ 0.26
LIG1-202ENST00000427526 RTEL1Q9NZ71 1219 aa16.68■□□□□ 0.26
LIG1-202ENST00000427526 NAP1L2Q9ULW6 460 aaPredicted RBP16.68■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms