RNA–Protein interactions for RNA: ENST00000416400.1

VPS54-204, Transcript of VPS54, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS54, Length 1,277 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-204ENST00000416400 TRIM11Q96F44 468 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 SETDB2Q96T68 719 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 SRCIN1Q9C0H9 1055 aa7.49□□□□□ -1.21
VPS54-204ENST00000416400 SRA1Q9HD15 236 aaKnown RBP7.49□□□□□ -1.21
VPS54-204ENST00000416400 SH2B1Q9NRF2 756 aaPredicted RBP7.49□□□□□ -1.21
VPS54-204ENST00000416400 LINC01387J3KSC0 135 aa7.48□□□□□ -1.21
VPS54-204ENST00000416400 XRCC5P13010 732 aaKnown RBP7.48□□□□□ -1.21
VPS54-204ENST00000416400 GNA15P30679 374 aa7.48□□□□□ -1.21
VPS54-204ENST00000416400 NXPE4Q6UWF7 544 aa7.48□□□□□ -1.21
VPS54-204ENST00000416400 ALYREFQ86V81 257 aaKnown RBP7.48□□□□□ -1.21
VPS54-204ENST00000416400 DDX54Q8TDD1 881 aaKnown RBP7.48□□□□□ -1.21
VPS54-204ENST00000416400 FAM161BQ96MY7 647 aa7.48□□□□□ -1.21
VPS54-204ENST00000416400 TCF12Q99081 682 aa7.48□□□□□ -1.21
VPS54-204ENST00000416400 A0A0A0MRY4 1105 aa7.47□□□□□ -1.21
VPS54-204ENST00000416400 TMEM238LA0A1B0GVL6 79 aa7.47□□□□□ -1.21
VPS54-204ENST00000416400 H3BRJ5 948 aa7.47□□□□□ -1.21
VPS54-204ENST00000416400 SORBS3O60504 671 aa7.47□□□□□ -1.21
VPS54-204ENST00000416400 EIF4EBP3O60516 100 aaPredicted RBP7.47□□□□□ -1.21
VPS54-204ENST00000416400 EIF4BP23588 611 aaKnown RBP7.47□□□□□ -1.21
VPS54-204ENST00000416400 GSTT1P30711 240 aa7.47□□□□□ -1.21
VPS54-204ENST00000416400 FCGRTP55899 365 aa7.47□□□□□ -1.21
VPS54-204ENST00000416400 DAB2P98082 770 aa7.47□□□□□ -1.21
VPS54-204ENST00000416400 IKBKEQ14164 716 aa7.47□□□□□ -1.21
VPS54-204ENST00000416400 PRPF40BQ6NWY9 871 aaKnown RBP7.47□□□□□ -1.21
VPS54-204ENST00000416400 METTL12A8MUP2 240 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 APBA3O96018 575 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 EPHA1P21709 976 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 BAG6P46379 1132 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 GRIA4P48058 902 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 COL9A3Q14050 684 aaPredicted RBP7.46□□□□□ -1.22
VPS54-204ENST00000416400 SPRED3Q2MJR0 410 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 TXNDC11Q6PKC3 985 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 SLC7A3Q8WY07 619 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 BACH2Q9BYV9 841 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 CLEC4MQ9H2X3 399 aaPredicted RBP7.46□□□□□ -1.22
VPS54-204ENST00000416400 C12orf49Q9H741 205 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 RNF19AQ9NV58 838 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 FAM8A1Q9UBU6 413 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 VTI1BQ9UEU0 232 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 SOX13Q9UN79 622 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 AKAP2Q9Y2D5 859 aa7.46□□□□□ -1.22
VPS54-204ENST00000416400 SPATA31C1P0DKV0 1188 aa7.45□□□□□ -1.22
VPS54-204ENST00000416400 PIP4K2BP78356 416 aa7.45□□□□□ -1.22
VPS54-204ENST00000416400 PTPN12Q05209 780 aaKnown RBP7.45□□□□□ -1.22
VPS54-204ENST00000416400 WNT8BQ93098 351 aa7.45□□□□□ -1.22
VPS54-204ENST00000416400 NACC1Q96RE7 527 aa7.45□□□□□ -1.22
VPS54-204ENST00000416400 SEC31BQ9NQW1 1179 aa7.45□□□□□ -1.22
VPS54-204ENST00000416400 AK5Q9Y6K8 562 aa7.45□□□□□ -1.22
VPS54-204ENST00000416400 SCAMP3O14828 347 aaKnown RBP7.44□□□□□ -1.22
VPS54-204ENST00000416400 FSCN2O14926 492 aa7.44□□□□□ -1.22
VPS54-204ENST00000416400 PCDH1Q08174 1060 aa7.44□□□□□ -1.22
VPS54-204ENST00000416400 FBXO11Q86XK2 927 aa7.44□□□□□ -1.22
VPS54-204ENST00000416400 FMR1NBQ8N0W7 255 aaPredicted RBP7.44□□□□□ -1.22
VPS54-204ENST00000416400 KLHL23Q8NBE8 558 aa7.44□□□□□ -1.22
VPS54-204ENST00000416400 ABCB6Q9NP58 842 aa7.44□□□□□ -1.22
VPS54-204ENST00000416400 OSGEPQ9NPF4 335 aa7.44□□□□□ -1.22
VPS54-204ENST00000416400 FAM229AH3BQW9 127 aa7.43□□□□□ -1.22
VPS54-204ENST00000416400 ELNP15502 786 aa7.43□□□□□ -1.22
VPS54-204ENST00000416400 ITPKAP23677 461 aa7.43□□□□□ -1.22
VPS54-204ENST00000416400 C19orf57Q0VDD7 668 aa7.43□□□□□ -1.22
VPS54-204ENST00000416400 RPS26P11Q5JNZ5 115 aaPredicted RBP7.43□□□□□ -1.22
VPS54-204ENST00000416400 TMEM87AQ8NBN3 555 aa7.43□□□□□ -1.22
VPS54-204ENST00000416400 OSBPL7Q9BZF2 842 aa7.43□□□□□ -1.22
VPS54-204ENST00000416400 PPP2R3AQ06190 1150 aa7.42□□□□□ -1.22
VPS54-204ENST00000416400 VN1R5Q7Z5H4 357 aa7.42□□□□□ -1.22
VPS54-204ENST00000416400 GLIS3Q8NEA6 775 aa7.42□□□□□ -1.22
VPS54-204ENST00000416400 CARD10Q9BWT7 1032 aa7.42□□□□□ -1.22
VPS54-204ENST00000416400 ZNF576Q9H609 170 aa7.42□□□□□ -1.22
VPS54-204ENST00000416400 GPN3Q9UHW5 284 aaPredicted RBP7.42□□□□□ -1.22
VPS54-204ENST00000416400 USP17L7P0C7H9 530 aa7.41□□□□□ -1.22
VPS54-204ENST00000416400 ESRRAP11474 423 aaPredicted RBP7.41□□□□□ -1.22
VPS54-204ENST00000416400 CD68P34810 354 aaPredicted RBP7.41□□□□□ -1.22
VPS54-204ENST00000416400 GSTM4Q03013 218 aa7.41□□□□□ -1.22
VPS54-204ENST00000416400 KCNMA1Q12791 1236 aa7.41□□□□□ -1.22
VPS54-204ENST00000416400 SUZ12Q15022 739 aaKnown RBP7.41□□□□□ -1.22
VPS54-204ENST00000416400 SETDB1Q15047 1291 aa7.41□□□□□ -1.22
VPS54-204ENST00000416400 ADAMTSL4Q6UY14 1074 aa7.41□□□□□ -1.22
VPS54-204ENST00000416400 CEP44Q9C0F1 390 aa7.41□□□□□ -1.22
VPS54-204ENST00000416400 USP21Q9UK80 565 aa7.41□□□□□ -1.22
VPS54-204ENST00000416400 TTF2Q9UNY4 1162 aaKnown RBP7.41□□□□□ -1.22
VPS54-204ENST00000416400 C9orf172C9J069 976 aa7.4□□□□□ -1.22
VPS54-204ENST00000416400 SOX1O00570 391 aaPredicted RBP7.4□□□□□ -1.22
VPS54-204ENST00000416400 IGSF3O75054 1194 aa7.4□□□□□ -1.22
VPS54-204ENST00000416400 COL8A1P27658 744 aa7.4□□□□□ -1.22
VPS54-204ENST00000416400 GRIK4Q16099 956 aa7.4□□□□□ -1.22
VPS54-204ENST00000416400 IGF2-ASQ6U949 168 aa7.4□□□□□ -1.22
VPS54-204ENST00000416400 CRELD1Q96HD1 420 aa7.4□□□□□ -1.22
VPS54-204ENST00000416400 SOX17Q9H6I2 414 aaPredicted RBP7.4□□□□□ -1.22
VPS54-204ENST00000416400 PPM1HQ9ULR3 514 aa7.4□□□□□ -1.22
VPS54-204ENST00000416400 DEAF1O75398 565 aaPredicted RBP7.39□□□□□ -1.23
VPS54-204ENST00000416400 ERCC5P28715 1186 aaPredicted RBP7.39□□□□□ -1.23
VPS54-204ENST00000416400 HDLBPQ00341 1268 aaKnown RBP7.39□□□□□ -1.23
VPS54-204ENST00000416400 HNRNPUQ00839 825 aaKnown RBP eCLIP7.39□□□□□ -1.23
VPS54-204ENST00000416400 NRG1Q02297 640 aaPredicted RBP7.39□□□□□ -1.23
VPS54-204ENST00000416400 RASSF7Q02833 373 aa7.39□□□□□ -1.23
VPS54-204ENST00000416400 LDLRAD1Q5T700 205 aa7.39□□□□□ -1.23
VPS54-204ENST00000416400 TMEM151AQ8N4L1 468 aa7.39□□□□□ -1.23
VPS54-204ENST00000416400 KLHDC7BQ96G42 594 aa7.39□□□□□ -1.23
VPS54-204ENST00000416400 METTL5Q9NRN9 209 aaKnown RBP7.39□□□□□ -1.23
VPS54-204ENST00000416400 TMEM39AQ9NV64 488 aa7.39□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms