RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 NBPF4Q96M43 638 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 DRC1Q96MC2 740 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 SLC26A6Q9BXS9 759 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 ANKRD2Q9GZV1 360 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 DCTPP1Q9H773 170 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 SSH2Q76I76 1423 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 EIF3DO15371 548 aaKnown RBP eCLIP6.88□□□□□ -1.313e-6■■□□□ 11.9
SCN1A-203ENST00000409050 ZBTB16Q05516 673 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 KSR2Q6VAB6 950 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 LDHAL6AQ6ZMR3 332 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 CCDC65Q8IXS2 484 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 LINS1Q8NG48 757 aa6.88□□□□□ -1.31
SCN1A-203ENST00000409050 TRMT1Q9NXH9 659 aaKnown RBP6.88□□□□□ -1.31
SCN1A-203ENST00000409050 MSH6P52701 1360 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 ATP8B1O43520 1251 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 PRPF4BQ13523 1007 aaKnown RBP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 CFAP157Q5JU67 520 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 IFIT1BQ5T764 474 aaKnown RBP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 CPLX4Q7Z7G2 160 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 TMTC1Q8IUR5 882 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 TMOD4Q9NZQ9 345 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 FBXO3Q9UK99 471 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 IQSEC3Q9UPP2 1182 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 DENND4BO75064 1496 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 MXRA7P84157 204 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 FAM160A1Q05DH4 1040 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 DHX32Q7L7V1 743 aaKnown RBP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 CCDC186Q7Z3E2 898 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 IFT20Q8IY31 132 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 ATRIPQ8WXE1 791 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 TXNDC16Q9P2K2 825 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 AKR1B15C9JRZ8 316 aaPredicted RBP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 AKAP4Q5JQC9 854 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 GBP6Q6ZN66 633 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 SRGAP1Q7Z6B7 1085 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 RUNDC3BQ96NL0 473 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 SDAD1Q9NVU7 687 aaKnown RBP eCLIP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 ANKIB1Q9P2G1 1089 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 CPSF2Q9P2I0 782 aaKnown RBP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 EXOC7Q9UPT5 735 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 CD109Q6YHK3 1445 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 CNNM4Q6P4Q7 775 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 CYP26C1Q6V0L0 522 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 INTS8Q75QN2 995 aaKnown RBP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 STMN2Q93045 179 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 RRP36Q96EU6 259 aaKnown RBP6.87□□□□□ -1.31
SCN1A-203ENST00000409050 CCDC114Q96M63 670 aa6.87□□□□□ -1.31
SCN1A-203ENST00000409050 HCLS1P14317 486 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-203ENST00000409050 PPP1R2P3Q6NXS1 205 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 CPLX3Q8WVH0 158 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 RBM8AQ9Y5S9 174 aaKnown RBP6.86□□□□□ -1.31
SCN1A-203ENST00000409050 PLB1Q6P1J6 1458 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 FAM177BA6PVY3 158 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 ZNF445P59923 1031 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 ST5P78524 1137 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 TMED8Q6PL24 325 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-203ENST00000409050 SYNCQ9H7C4 482 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 SHANK2Q9UPX8 1470 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 RNF113AO15541 343 aaKnown RBP6.86□□□□□ -1.31
SCN1A-203ENST00000409050 GNA14O95837 355 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 RRS1Q15050 365 aaKnown RBP6.86□□□□□ -1.31
SCN1A-203ENST00000409050 HAUS3Q68CZ6 603 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 ANKRD13DQ6ZTN6 518 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 AFAP1L1Q8TED9 768 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 HOOK2Q96ED9 719 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 NAPGQ99747 312 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-203ENST00000409050 MAP3K2Q9Y2U5 619 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 EXOC5O00471 708 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 SDSP20132 328 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 ASIC1P78348 528 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 ZNF804AQ7Z570 1209 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 USP48Q86UV5 1035 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 UBL4BQ8N7F7 174 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 TRPM2O94759 1503 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 TRAPPC8Q9Y2L5 1435 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 MAST3O60307 1309 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 MACROD2A1Z1Q3 448 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 ARHGAP6O43182 974 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 CUTAO60888 179 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 BRD3Q15059 726 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 ATP2B3Q16720 1220 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 LIN9Q5TKA1 542 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 CCDC84Q86UT8 332 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-203ENST00000409050 BRF1Q92994 677 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 CCDC8Q9H0W5 538 aaPredicted RBP6.86□□□□□ -1.31
SCN1A-203ENST00000409050 RSPH14Q9UHP6 348 aa6.86□□□□□ -1.31
SCN1A-203ENST00000409050 GRM8O00222 908 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 STK10O94804 968 aaKnown RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 APOBRQ0VD83 1088 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 PAK2Q13177 524 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 BICD1Q96G01 975 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 CDCA7Q9BWT1 371 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 DACT1Q9NYF0 836 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 GOLGA8QA0A0J9YX86 632 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 GOLGA8OA6NCC3 632 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 GOLGA8NF8WBI6 632 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 CASQ2O14958 399 aaPredicted RBP6.85□□□□□ -1.31
SCN1A-203ENST00000409050 TSPY3P0CV98 308 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 TSPY8P0CW00 308 aa6.85□□□□□ -1.31
SCN1A-203ENST00000409050 CADPS2Q86UW7 1296 aa6.85□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms