RNA–Protein interactions for RNA: ENST00000397606.7

PTPRD-204, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 5,038 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-204ENST00000397606 LINC00116Q8NCU8 138 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 HAUS7Q99871 368 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 BSDC1Q9NW68 430 aaPredicted RBP9.68□□□□□ -0.86
PTPRD-204ENST00000397606 STAP2Q9UGK3 403 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 SGSM2O43147 1006 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 TXLNAP40222 546 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 SLC4A8Q2Y0W8 1093 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 CREB3L3Q68CJ9 461 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 MASTLQ96GX5 879 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 GJA3Q9Y6H8 435 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 NWD1Q149M9 1564 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 GPAA1O43292 621 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 MBD3O95983 291 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 BCAMP50895 628 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 RBM26Q5T8P6 1007 aaKnown RBP9.68□□□□□ -0.86
PTPRD-204ENST00000397606 BRF1Q92994 677 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 GTF2IP78347 998 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 MFSD14BQ5SR56 506 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 CFAP45Q9UL16 551 aa9.68□□□□□ -0.86
PTPRD-204ENST00000397606 ATF5Q9Y2D1 282 aaPredicted RBP9.68□□□□□ -0.86
PTPRD-204ENST00000397606 NF2P35240 595 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 METAP2P50579 478 aaKnown RBP eCLIP9.67□□□□□ -0.86
PTPRD-204ENST00000397606 DBNLQ9UJU6 430 aaKnown RBP9.67□□□□□ -0.86
PTPRD-204ENST00000397606 KDM6AO15550 1401 aaPredicted RBP9.67□□□□□ -0.86
PTPRD-204ENST00000397606 BECN2A8MW95 431 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 FIBPO43427 364 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 EPB41L2O43491 1005 aaKnown RBP9.67□□□□□ -0.86
PTPRD-204ENST00000397606 SSRP1Q08945 709 aaKnown RBP9.67□□□□□ -0.86
PTPRD-204ENST00000397606 NFIXQ14938 502 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 TPD52L1Q16890 204 aaPredicted RBP9.67□□□□□ -0.86
PTPRD-204ENST00000397606 MICU3Q86XE3 530 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 IFIT1BQ5T764 474 aaKnown RBP9.67□□□□□ -0.86
PTPRD-204ENST00000397606 SIRT2Q8IXJ6 389 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 PIBF1Q8WXW3 757 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 C8orf76Q96K31 380 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 OSBPL3Q9H4L5 887 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 ZNF532Q9HCE3 1301 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 MON2Q7Z3U7 1717 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 CAMTA2O94983 1202 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 IARSP41252 1262 aaKnown RBP9.67□□□□□ -0.86
PTPRD-204ENST00000397606 USP26Q9BXU7 913 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 TBC1D2Q9BYX2 928 aa9.67□□□□□ -0.86
PTPRD-204ENST00000397606 KLF18A0A0U1RQI7 1052 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 CCT2P78371 535 aaKnown RBP9.66□□□□□ -0.86
PTPRD-204ENST00000397606 EPHA10Q5JZY3 1008 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 FAM227BQ96M60 508 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 SDF4Q9BRK5 362 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 ARMT1Q9H993 441 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 NDUFB9Q9Y6M9 179 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 GOLGA6L19H0YKK7 550 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 ZBTB43O43298 467 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 GNAQP50148 359 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 CAMTA1Q9Y6Y1 1673 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 SLIT3O75094 1523 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 NALCNQ8IZF0 1738 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 MED1Q15648 1581 aaPredicted RBP9.66□□□□□ -0.86
PTPRD-204ENST00000397606 PRC1O43663 620 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 PHKA1P46020 1223 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 CCDC93Q567U6 631 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 TTLL5Q6EMB2 1281 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 DHX32Q7L7V1 743 aaKnown RBP9.66□□□□□ -0.86
PTPRD-204ENST00000397606 ZNF34Q8IZ26 560 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 CCDC82Q8N4S0 544 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 TTLL6Q8N841 843 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 CCDC12Q8WUD4 166 aaPredicted RBP9.66□□□□□ -0.86
PTPRD-204ENST00000397606 CLEC11AQ9Y240 323 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 PDIA6Q15084 440 aa9.66□□□□□ -0.86
PTPRD-204ENST00000397606 TEKT1Q969V4 418 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 BRIP1Q9BX63 1249 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 AATFQ9NY61 560 aaKnown RBP eCLIP9.65□□□□□ -0.86
PTPRD-204ENST00000397606 BCL9O00512 1426 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 KINO60870 393 aaKnown RBP9.65□□□□□ -0.86
PTPRD-204ENST00000397606 CEBPZQ03701 1054 aaKnown RBP9.65□□□□□ -0.86
PTPRD-204ENST00000397606 CDK5RAP3Q96JB5 506 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 TTF2Q9UNY4 1162 aaKnown RBP9.65□□□□□ -0.86
PTPRD-204ENST00000397606 CALM1P0DP23 149 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 CALM2P0DP24 149 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 CALM3P0DP25 149 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 ADORA1P30542 326 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 TRAF1Q13077 416 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 GPR162Q16538 588 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 SASS6Q6UVJ0 657 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 CCDC129Q6ZRS4 1044 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 CCDC125Q86Z20 511 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 CREBRFQ8IUR6 639 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 PLA2G12BQ9BX93 195 aa9.65□□□□□ -0.86
PTPRD-204ENST00000397606 SASH1O94885 1247 aa9.65□□□□□ -0.87
PTPRD-204ENST00000397606 ME1P48163 572 aa9.65□□□□□ -0.87
PTPRD-204ENST00000397606 DLGAP5Q15398 846 aa9.65□□□□□ -0.87
PTPRD-204ENST00000397606 RTKN2Q8IZC4 609 aa9.65□□□□□ -0.87
PTPRD-204ENST00000397606 PXDNLA1KZ92 1463 aa9.65□□□□□ -0.87
PTPRD-204ENST00000397606 PDE6AP16499 860 aa9.64□□□□□ -0.87
PTPRD-204ENST00000397606 Q6ZUG5 572 aa9.64□□□□□ -0.87
PTPRD-204ENST00000397606 EDC3Q96F86 508 aaKnown RBP9.64□□□□□ -0.87
PTPRD-204ENST00000397606 ORC3Q9UBD5 711 aaPredicted RBP9.64□□□□□ -0.87
PTPRD-204ENST00000397606 CEP131Q9UPN4 1083 aa9.64□□□□□ -0.87
PTPRD-204ENST00000397606 PRPF40AO75400 957 aaKnown RBP9.64□□□□□ -0.87
PTPRD-204ENST00000397606 GSPT1P15170 499 aaKnown RBP9.64□□□□□ -0.87
PTPRD-204ENST00000397606 NFKBIBQ15653 356 aa9.64□□□□□ -0.87
PTPRD-204ENST00000397606 DOK7Q18PE1 504 aa9.64□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 139.9 ms