RNA–Protein interactions for RNA: ENST00000395969.6

VPS41-203, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 5 BASIC

Gene VPS41, Length 3,181 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-203ENST00000395969 LMBR1LQ6UX01 489 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 LINC00116Q8NCU8 138 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 LLPHQ9BRT6 129 aaKnown RBP6.37□□□□□ -1.39
VPS41-203ENST00000395969 STRN4Q9NRL3 753 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 ROBO3Q96MS0 1386 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 PDE8BO95263 885 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 ANXA1P04083 346 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 HOXA10P31260 410 aaPredicted RBP6.37□□□□□ -1.39
VPS41-203ENST00000395969 KIAA2012Q0VF49 1180 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 TFCP2Q12800 502 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 GIMAP6Q6P9H5 292 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 AACSQ86V21 672 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 DZIP3Q86Y13 1208 aaKnown RBP6.37□□□□□ -1.39
VPS41-203ENST00000395969 GPT2Q8TD30 523 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 UTP14AQ9BVJ6 771 aaKnown RBP6.37□□□□□ -1.39
VPS41-203ENST00000395969 BSDC1Q9NW68 430 aaPredicted RBP6.37□□□□□ -1.39
VPS41-203ENST00000395969 ANAPC4Q9UJX5 808 aa6.37□□□□□ -1.39
VPS41-203ENST00000395969 MAP4K4O95819 1239 aaPredicted RBP6.36□□□□□ -1.39
VPS41-203ENST00000395969 MYL6BP14649 208 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 EXOSC10Q01780 885 aaKnown RBP6.36□□□□□ -1.39
VPS41-203ENST00000395969 HLFQ16534 295 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 IPO4Q8TEX9 1081 aaKnown RBP6.36□□□□□ -1.39
VPS41-203ENST00000395969 LPIN2Q92539 896 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 FOXP2O15409 715 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 KDM4AO75164 1064 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 BRD1O95696 1058 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 PSMA5P28066 241 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 IRF5Q13568 498 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 UBE4AQ14139 1066 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 PUM3Q15397 648 aaKnown RBP6.36□□□□□ -1.39
VPS41-203ENST00000395969 MCMDC2Q4G0Z9 681 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 MCTP1Q6DN14 999 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 ZSCAN25Q6NSZ9 544 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 RUFY3Q7L099 469 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 TRERF1Q96PN7 1200 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 IL25Q9H293 177 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 ANKRD18BA2A2Z9 1011 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 TM4SF1P30408 202 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 HS6ST3Q8IZP7 471 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 RETREG2Q8NC44 543 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 DDX54Q8TDD1 881 aaKnown RBP6.36□□□□□ -1.39
VPS41-203ENST00000395969 PIBF1Q8WXW3 757 aa6.36□□□□□ -1.39
VPS41-203ENST00000395969 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP6.36□□□□□ -1.39
VPS41-203ENST00000395969 IFIT5Q13325 482 aaKnown RBP6.35□□□□□ -1.39
VPS41-203ENST00000395969 FAM196AQ6ZSG2 479 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 USP21Q9UK80 565 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 COL1A1P02452 1464 aaPredicted RBP6.35□□□□□ -1.39
VPS41-203ENST00000395969 TAF1P21675 1872 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP6.35□□□□□ -1.39
VPS41-203ENST00000395969 UBAP1LF5GYI3 381 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 IRS4O14654 1257 aaPredicted RBP6.35□□□□□ -1.39
VPS41-203ENST00000395969 RNF113AO15541 343 aaKnown RBP6.35□□□□□ -1.39
VPS41-203ENST00000395969 FKBP1AP62942 108 aaKnown RBP6.35□□□□□ -1.39
VPS41-203ENST00000395969 CCDC152Q4G0S7 254 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 RNF20Q5VTR2 975 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 SUSD4Q5VX71 490 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 ATL3Q6DD88 541 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 FBXW7Q969H0 707 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 RBM42Q9BTD8 480 aaKnown RBP6.35□□□□□ -1.39
VPS41-203ENST00000395969 SPTLC3Q9NUV7 552 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 TMEM63CQ9P1W3 806 aa6.35□□□□□ -1.39
VPS41-203ENST00000395969 SLC5A1P13866 664 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 CCDC57Q2TAC2 916 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 SMARCC2Q8TAQ2 1214 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 ANKRD7Q92527 254 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 AKT1S1Q96B36 256 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 RNF25Q96BH1 459 aaPredicted RBP6.34□□□□□ -1.39
VPS41-203ENST00000395969 PAG1Q9NWQ8 432 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 TLR7Q9NYK1 1049 aaKnown RBP6.34□□□□□ -1.39
VPS41-203ENST00000395969 PA2G4Q9UQ80 394 aaKnown RBP6.34□□□□□ -1.39
VPS41-203ENST00000395969 ELP1O95163 1332 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 A0A1B0GUL7 405 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 SLC27A2O14975 620 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 ADD2P35612 726 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 CREB3L3Q68CJ9 461 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 FBXO33Q7Z6M2 555 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 NUTM1Q86Y26 1132 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 APPBP2Q92624 585 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 ARFGEF1Q9Y6D6 1849 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 AFF2P51816 1311 aa6.34□□□□□ -1.39
VPS41-203ENST00000395969 GNAT2P19087 354 aa6.34□□□□□ -1.4
VPS41-203ENST00000395969 ITGA6P23229 1130 aa6.34□□□□□ -1.4
VPS41-203ENST00000395969 RPS6KB1P23443 525 aa6.34□□□□□ -1.4
VPS41-203ENST00000395969 ATP6V1AP38606 617 aa6.34□□□□□ -1.4
VPS41-203ENST00000395969 NOVP48745 357 aa6.34□□□□□ -1.4
VPS41-203ENST00000395969 NMIQ13287 307 aaPredicted RBP6.34□□□□□ -1.4
VPS41-203ENST00000395969 ZNF772Q68DY9 489 aaPredicted RBP6.34□□□□□ -1.4
VPS41-203ENST00000395969 ZNF274Q96GC6 653 aaPredicted RBP6.34□□□□□ -1.4
VPS41-203ENST00000395969 CEP126Q9P2H0 1117 aa6.34□□□□□ -1.4
VPS41-203ENST00000395969 RBM27Q9P2N5 1060 aaKnown RBP6.34□□□□□ -1.4
VPS41-203ENST00000395969 LIMCH1Q9UPQ0 1083 aa6.34□□□□□ -1.4
VPS41-203ENST00000395969 KIF3AQ9Y496 699 aa6.34□□□□□ -1.4
VPS41-203ENST00000395969 NOLC1Q14978 699 aaKnown RBP eCLIP6.33□□□□□ -1.4
VPS41-203ENST00000395969 GRIPAP1Q4V328 841 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 FLAD1Q8NFF5 587 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 XAGE2Q96GT9 111 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 TMX3Q96JJ7 454 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 ANKRD2Q9GZV1 360 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 SUGT1Q9Y2Z0 365 aa6.33□□□□□ -1.4
VPS41-203ENST00000395969 ZDHHC9Q9Y397 364 aa6.33□□□□□ -1.4
Retrieved 100 of 20,778 RNA–protein pairs in 52.9 ms