RNA–Protein interactions for RNA: ENST00000395896.8

VPS13C-203, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13C, Length 14,579 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-203ENST00000395896 TSPY2A6NKD2 308 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 CREB3L3Q68CJ9 461 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 TNMDQ9H2S6 317 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 SH2D4AQ9H788 454 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 SUGT1Q9Y2Z0 365 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 USP42Q9H9J4 1324 aaKnown RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 LDHBP07195 334 aaKnown RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 STX8Q9UNK0 236 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 CBFA2T2O43439 604 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 FGFR1OPO95684 399 aaKnown RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 MMP14P50281 582 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 TNFAIP1Q13829 316 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 CNKSR1Q969H4 720 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 ANO10Q9NW15 660 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 TFCP2L1Q9NZI6 479 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 C6orf229H3BNL8 230 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 PDZRN4Q6ZMN7 1036 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 JDP2Q8WYK2 163 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 MAP4K1Q92918 833 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC39Q9UFE4 941 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC88AQ3V6T2 1871 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 PPP1R12BO60237 982 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 TUBB4BP68371 445 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 TMEM266Q2M3C6 531 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 TMEM67Q5HYA8 995 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 EAF2Q96CJ1 260 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 ATP8A2Q9NTI2 1148 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 ARPP21Q9UBL0 812 aaPredicted RBP3.92□□□□□ -1.78
VPS13C-203ENST00000395896 HDAC9Q9UKV0 1011 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 STK24Q9Y6E0 443 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 SMARCE1Q969G3 411 aa3.92□□□□□ -1.78
VPS13C-203ENST00000395896 TSGA10IPQ3SY00 556 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 SLIT3O75094 1523 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 UVSSAQ2YD98 709 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 IFIT1BQ5T764 474 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 GALNT17Q6IS24 598 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 H7C1W4 665 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 BAG4O95429 457 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 A1BGP04217 495 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 TNPO1Q92973 898 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 CDK5RAP3Q96JB5 506 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 EHMT1Q9H9B1 1298 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 CCDC194A0A1B0GVG4 234 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 MINDY4BA8MYZ0 360 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 SLC4A3P48751 1232 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 TNIP1Q15025 636 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 HIBADHP31937 336 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 SEMA3FQ13275 785 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 RRP12Q5JTH9 1297 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 XAGE2Q96GT9 111 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 MAP7D2Q96T17 732 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 TSPY26PQ9H489 355 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 CABP5Q9NP86 173 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 XDHP47989 1333 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 ZSCAN29Q8IWY8 852 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 MPHOSPH6Q99547 160 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 GOLGA6L9A6NEM1 432 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 FAM177BA6PVY3 158 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 B4DLN1 442 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 MRPL12P52815 198 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 FAM98CQ17RN3 349 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 CRACR2BQ8N4Y2 399 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 PIGBQ92521 554 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 RBM17Q96I25 401 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 KAT14Q9H8E8 782 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 COL5A2P05997 1499 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 POLD1P28340 1107 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 GOLGA6L1Q8N7Z2 621 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 NAP1L4Q99733 375 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 GPAA1O43292 621 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 SMARCA5O60264 1052 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 GSDMDP57764 484 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 TFCP2Q12800 502 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 IKQ13123 557 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 FAM43AQ8N2R8 423 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 NARFQ9UHQ1 456 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 KCNG1Q9UIX4 513 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 POLR3DP05423 398 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 BRF1Q92994 677 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 TSPY3P0CV98 308 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 TSPY8P0CW00 308 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 LIFRP42702 1097 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 TIMM10P62072 90 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 SSRP1Q08945 709 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 BSDC1Q9NW68 430 aaPredicted RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 PA2G4Q9UQ80 394 aaKnown RBP3.91□□□□□ -1.78
VPS13C-203ENST00000395896 MYH7P12883 1935 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 USP54Q70EL1 1684 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 TNNI2P48788 182 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 SPAG1Q07617 926 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 GRPEL1Q9HAV7 217 aa3.91□□□□□ -1.78
VPS13C-203ENST00000395896 DEXIO95424 95 aa3.9□□□□□ -1.78
VPS13C-203ENST00000395896 BAG6P46379 1132 aa3.9□□□□□ -1.78
VPS13C-203ENST00000395896 CEP89Q96ST8 783 aa3.9□□□□□ -1.78
VPS13C-203ENST00000395896 TRIM5Q9C035 493 aa3.9□□□□□ -1.78
VPS13C-203ENST00000395896 PARP3Q9Y6F1 533 aa3.9□□□□□ -1.78
VPS13C-203ENST00000395896 NFAT5O94916 1531 aa3.9□□□□□ -1.78
VPS13C-203ENST00000395896 ELP1O95163 1332 aa3.9□□□□□ -1.78
VPS13C-203ENST00000395896 RPS6KB1P23443 525 aa3.9□□□□□ -1.78
VPS13C-203ENST00000395896 GPS2Q13227 327 aa3.9□□□□□ -1.78
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms