RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 PDIA4P13667 645 aaKnown RBP15.77■□□□□ 0.12
CCDC3-202ENST00000378839 NAP1L2Q9ULW6 460 aaPredicted RBP15.77■□□□□ 0.12
CCDC3-202ENST00000378839 FAM177BA6PVY3 158 aa15.77■□□□□ 0.11
CCDC3-202ENST00000378839 H3BQV1 296 aa15.77■□□□□ 0.11
CCDC3-202ENST00000378839 KDM4AO75164 1064 aa15.77■□□□□ 0.11
CCDC3-202ENST00000378839 PDE8BO95263 885 aa15.77■□□□□ 0.11
CCDC3-202ENST00000378839 EVCP57679 992 aa15.77■□□□□ 0.11
CCDC3-202ENST00000378839 RBM10P98175 930 aaKnown RBP15.77■□□□□ 0.11
CCDC3-202ENST00000378839 IFFO2Q5TF58 517 aa15.77■□□□□ 0.11
CCDC3-202ENST00000378839 CCDC39Q9UFE4 941 aa15.77■□□□□ 0.11
CCDC3-202ENST00000378839 DDX60Q8IY21 1712 aaKnown RBP15.76■□□□□ 0.11
CCDC3-202ENST00000378839 OFD1O75665 1012 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 ADD2P35612 726 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 IL6STP40189 918 aaPredicted RBP15.76■□□□□ 0.11
CCDC3-202ENST00000378839 CCDC102BQ68D86 513 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 OTUD7BQ6GQQ9 843 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 ZNF274Q96GC6 653 aaPredicted RBP15.76■□□□□ 0.11
CCDC3-202ENST00000378839 GJB4Q9NTQ9 266 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 WWC3Q9ULE0 1092 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 MYH7P12883 1935 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 PDE8AO60658 829 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 EIF5P55010 431 aaKnown RBP15.76■□□□□ 0.11
CCDC3-202ENST00000378839 FBXL16Q8N461 479 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 SEC31BQ9NQW1 1179 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 LRP5O75197 1615 aa15.76■□□□□ 0.11
CCDC3-202ENST00000378839 COL22A1Q8NFW1 1626 aaPredicted RBP15.75■□□□□ 0.11
CCDC3-202ENST00000378839 ERVV-1B6SEH8 477 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 UBAP1LF5GYI3 381 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 FGFR2P21802 821 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 ITPK1Q13572 414 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 NUP62CLQ9H1M0 184 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 ADAMTS2O95450 1211 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 ZFYP08048 801 aaPredicted RBP15.75■□□□□ 0.11
CCDC3-202ENST00000378839 SLC9C2Q5TAH2 1124 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 MARCH10Q8NA82 808 aaPredicted RBP15.75■□□□□ 0.11
CCDC3-202ENST00000378839 INCENPQ9NQS7 918 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 MYH15Q9Y2K3 1946 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 TCRBV5S4A2TA0A5A2 114 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 NAA16Q6N069 864 aaPredicted RBP15.75■□□□□ 0.11
CCDC3-202ENST00000378839 RBM43Q6ZSC3 357 aaKnown RBP15.75■□□□□ 0.11
CCDC3-202ENST00000378839 TBC1D10CQ8IV04 446 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 USP28Q96RU2 1077 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 GOLPH3LQ9H4A5 285 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 TACC3Q9Y6A5 838 aa15.75■□□□□ 0.11
CCDC3-202ENST00000378839 CARMIL3Q8ND23 1372 aa15.74■□□□□ 0.11
CCDC3-202ENST00000378839 PRC1O43663 620 aa15.74■□□□□ 0.11
CCDC3-202ENST00000378839 TYRO3Q06418 890 aa15.74■□□□□ 0.11
CCDC3-202ENST00000378839 ZNF512BQ96KM6 892 aaPredicted RBP15.74■□□□□ 0.11
CCDC3-202ENST00000378839 SENP2Q9HC62 589 aa15.74■□□□□ 0.11
CCDC3-202ENST00000378839 MAP3K11Q16584 847 aa15.74■□□□□ 0.11
CCDC3-202ENST00000378839 CLSTN2Q9H4D0 955 aa15.74■□□□□ 0.11
CCDC3-202ENST00000378839 ABCC12Q96J65 1359 aa15.74■□□□□ 0.11
CCDC3-202ENST00000378839 IMMTQ16891 758 aaKnown RBP15.73■□□□□ 0.11
CCDC3-202ENST00000378839 ZSCAN16Q9H4T2 348 aaPredicted RBP15.73■□□□□ 0.11
CCDC3-202ENST00000378839 ZNF532Q9HCE3 1301 aa15.73■□□□□ 0.11
CCDC3-202ENST00000378839 ARID4AP29374 1257 aaPredicted RBP15.73■□□□□ 0.11
CCDC3-202ENST00000378839 CRKLP46109 303 aaKnown RBP15.73■□□□□ 0.11
CCDC3-202ENST00000378839 CYB5R4Q7L1T6 521 aa15.73■□□□□ 0.11
CCDC3-202ENST00000378839 LUZP1Q86V48 1076 aa15.73■□□□□ 0.11
CCDC3-202ENST00000378839 TTC12Q9H892 705 aaPredicted RBP15.73■□□□□ 0.11
CCDC3-202ENST00000378839 MYH14Q7Z406 1995 aaKnown RBP15.73■□□□□ 0.11
CCDC3-202ENST00000378839 SPATA31A1Q5TZJ5 1347 aa15.73■□□□□ 0.11
CCDC3-202ENST00000378839 WTIPA6NIX2 430 aaPredicted RBP15.73■□□□□ 0.11
CCDC3-202ENST00000378839 IDH1O75874 414 aaKnown RBP15.73■□□□□ 0.11
CCDC3-202ENST00000378839 C17orf53Q8N3J3 647 aaPredicted RBP15.73■□□□□ 0.11
CCDC3-202ENST00000378839 TNMDQ9H2S6 317 aa15.73■□□□□ 0.11
CCDC3-202ENST00000378839 A0A0G2JS52 829 aa15.72■□□□□ 0.11
CCDC3-202ENST00000378839 CTNNA3Q9UI47 895 aa15.72■□□□□ 0.11
CCDC3-202ENST00000378839 RCOR1Q9UKL0 485 aa15.72■□□□□ 0.11
CCDC3-202ENST00000378839 PHLPP1O60346 1717 aa15.72■□□□□ 0.11
CCDC3-202ENST00000378839 KLF18A0A0U1RQI7 1052 aa15.72■□□□□ 0.11
CCDC3-202ENST00000378839 CAMTA2O94983 1202 aa15.72■□□□□ 0.11
CCDC3-202ENST00000378839 CCDC192P0DO97 292 aa15.72■□□□□ 0.11
CCDC3-202ENST00000378839 PDE6AP16499 860 aa15.72■□□□□ 0.11
CCDC3-202ENST00000378839 ATRNO75882 1429 aa15.72■□□□□ 0.11
CCDC3-202ENST00000378839 A0A087WWV3 80 aa15.71■□□□□ 0.11
CCDC3-202ENST00000378839 ATP6V1AP38606 617 aa15.71■□□□□ 0.11
CCDC3-202ENST00000378839 HMGN5P82970 282 aaKnown RBP15.71■□□□□ 0.11
CCDC3-202ENST00000378839 NRAPQ86VF7 1730 aa15.71■□□□□ 0.11
CCDC3-202ENST00000378839 ZNF213O14771 459 aa15.71■□□□□ 0.11
CCDC3-202ENST00000378839 SNW1Q13573 536 aaKnown RBP15.71■□□□□ 0.11
CCDC3-202ENST00000378839 ANO6Q4KMQ2 910 aa15.71■□□□□ 0.11
CCDC3-202ENST00000378839 BICD2Q8TD16 824 aa15.71■□□□□ 0.11
CCDC3-202ENST00000378839 KCNQ2O43526 872 aa15.71■□□□□ 0.1
CCDC3-202ENST00000378839 PTMAP06454 111 aaKnown RBP15.71■□□□□ 0.1
CCDC3-202ENST00000378839 MCM5P33992 734 aa15.71■□□□□ 0.1
CCDC3-202ENST00000378839 PLCB2Q00722 1185 aa15.71■□□□□ 0.1
CCDC3-202ENST00000378839 RASGRF1Q13972 1273 aa15.71■□□□□ 0.1
CCDC3-202ENST00000378839 CCDC87Q9NVE4 849 aa15.71■□□□□ 0.1
CCDC3-202ENST00000378839 GOLGA6L4A6NEF3 574 aa15.7■□□□□ 0.1
CCDC3-202ENST00000378839 PIP4K2BP78356 416 aa15.7■□□□□ 0.1
CCDC3-202ENST00000378839 PUM3Q15397 648 aaKnown RBP15.7■□□□□ 0.1
CCDC3-202ENST00000378839 SMIM5Q71RC9 77 aa15.7■□□□□ 0.1
CCDC3-202ENST00000378839 CBX8Q9HC52 389 aa15.7■□□□□ 0.1
CCDC3-202ENST00000378839 EPB41L4AQ9HCS5 686 aaPredicted RBP15.7■□□□□ 0.1
CCDC3-202ENST00000378839 PODXL2Q9NZ53 605 aa15.7■□□□□ 0.1
CCDC3-202ENST00000378839 C4AP0C0L4 1744 aa15.7■□□□□ 0.1
CCDC3-202ENST00000378839 C4BP0C0L5 1744 aa15.7■□□□□ 0.1
CCDC3-202ENST00000378839 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.7■□□□□ 0.1
CCDC3-202ENST00000378839 NCOA7Q8NI08 942 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms