RNA–Protein interactions for RNA: ENST00000378526.8

LIG3-202, Transcript of DNA ligase 3, humanhuman

APPRIS P4 TSL 1 (best) BASIC

Gene LIG3, Length 8,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-202ENST00000378526 ANGPTL3Q9Y5C1 460 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 DENND2CQ68D51 928 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 RIC3Q7Z5B4 369 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 TXLNGQ9NUQ3 528 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 SBDSQ9Y3A5 250 aaKnown RBP eCLIP9.8□□□□□ -0.84
LIG3-202ENST00000378526 KCNH8Q96L42 1107 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 NBPF3Q9H094 633 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 CHCHD3Q9NX63 227 aaKnown RBP9.8□□□□□ -0.84
LIG3-202ENST00000378526 PPP4R1Q8TF05 950 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 TCP11L1Q9NUJ3 509 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 BMP15O95972 392 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 HCLS1P14317 486 aaPredicted RBP9.8□□□□□ -0.84
LIG3-202ENST00000378526 ARHGAP4P98171 946 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 PAK2Q13177 524 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 ANO6Q4KMQ2 910 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 WDR46O15213 610 aaKnown RBP9.8□□□□□ -0.84
LIG3-202ENST00000378526 KDM1AO60341 852 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 CLTAP09496 248 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 OCA2Q04671 838 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 C8orf74Q6P047 294 aa9.8□□□□□ -0.84
LIG3-202ENST00000378526 TLDC2A0PJX2 215 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 KRT10P13645 584 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 ITIH3Q06033 890 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 RRP15Q9Y3B9 282 aaKnown RBP9.79□□□□□ -0.84
LIG3-202ENST00000378526 FLOT1O75955 427 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 TRIM14Q14142 442 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 GLE1Q53GS7 698 aaKnown RBP9.79□□□□□ -0.84
LIG3-202ENST00000378526 FAM71BQ8TC56 605 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 CEP19Q96LK0 163 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 TRIM8Q9BZR9 551 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 MIA2Q96PC5 1412 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 RAPGEF4Q8WZA2 1011 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 A0A087WUV0 522 aaPredicted RBP9.79□□□□□ -0.84
LIG3-202ENST00000378526 STX6O43752 255 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 CCDC25Q86WR0 208 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 NAPGQ99747 312 aaPredicted RBP9.79□□□□□ -0.84
LIG3-202ENST00000378526 JPH2Q9BR39 696 aaPredicted RBP9.79□□□□□ -0.84
LIG3-202ENST00000378526 WWC3Q9ULE0 1092 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 SEL1L2Q5TEA6 688 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 TSKSQ9UJT2 592 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 PPM1FP49593 454 aaPredicted RBP9.79□□□□□ -0.84
LIG3-202ENST00000378526 NBPF9Q3BBW0 867 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 CCDC122Q5T0U0 273 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 CCDC186Q7Z3E2 898 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 CCDC42Q96M95 316 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 GDAP1L1Q96MZ0 367 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 UTP6Q9NYH9 597 aaKnown RBP9.79□□□□□ -0.84
LIG3-202ENST00000378526 MPHOSPH8Q99549 860 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 TUBB6Q9BUF5 446 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 TSPYL4Q9UJ04 414 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 TSC22D4Q9Y3Q8 395 aa9.79□□□□□ -0.84
LIG3-202ENST00000378526 KRT8P05787 483 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 HHATQ5VTY9 493 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 DDX42Q86XP3 938 aaKnown RBP eCLIP9.78□□□□□ -0.84
LIG3-202ENST00000378526 KCNG4Q8TDN1 519 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 MPHOSPH6Q99547 160 aaKnown RBP9.78□□□□□ -0.84
LIG3-202ENST00000378526 HOMER3Q9NSC5 361 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 EXOC1Q9NV70 894 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 FRMD3A2A2Y4 597 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 ZNF569Q5MCW4 686 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 MYSM1Q5VVJ2 828 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 NBPF10Q6P3W6 841 aaKnown RBP9.78□□□□□ -0.84
LIG3-202ENST00000378526 SH3GL2Q99962 352 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 IMPACTQ9P2X3 320 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 ANGPTL2Q9UKU9 493 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 MAP3K7O43318 606 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 KDM4AO75164 1064 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 EFHD1Q9BUP0 239 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 ACTR5Q9H9F9 607 aaPredicted RBP9.78□□□□□ -0.84
LIG3-202ENST00000378526 NUP155O75694 1391 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 PPP2R5EQ16537 467 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 PODNQ7Z5L7 613 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 CAPS2Q9BXY5 557 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 ATG3Q9NT62 314 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 BICDL1Q6ZP65 573 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 ATP6V0A1Q93050 837 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 ZNF428Q96B54 188 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 OLFM3Q96PB7 478 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 RPSAP08865 295 aaKnown RBP9.78□□□□□ -0.84
LIG3-202ENST00000378526 HSPA8P11142 646 aaKnown RBP9.78□□□□□ -0.84
LIG3-202ENST00000378526 LMNB1P20700 586 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 MCF2L2Q86YR7 1114 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 MAK16Q9BXY0 300 aaKnown RBP9.78□□□□□ -0.84
LIG3-202ENST00000378526 EHMT1Q9H9B1 1298 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 TTF2Q9UNY4 1162 aaKnown RBP9.78□□□□□ -0.84
LIG3-202ENST00000378526 SESN1Q9Y6P5 492 aa9.78□□□□□ -0.84
LIG3-202ENST00000378526 MRPS15P82914 257 aaKnown RBP9.77□□□□□ -0.84
LIG3-202ENST00000378526 CCDC15Q0P6D6 951 aa9.77□□□□□ -0.84
LIG3-202ENST00000378526 ANKFY1Q9P2R3 1169 aa9.77□□□□□ -0.84
LIG3-202ENST00000378526 PUF60Q9UHX1 559 aaKnown RBP9.77□□□□□ -0.84
LIG3-202ENST00000378526 DBNLQ9UJU6 430 aaKnown RBP9.77□□□□□ -0.84
LIG3-202ENST00000378526 ATP6V0A2Q9Y487 856 aa9.77□□□□□ -0.84
LIG3-202ENST00000378526 HARSP12081 509 aaKnown RBP9.77□□□□□ -0.84
LIG3-202ENST00000378526 P3H4Q92791 437 aa9.77□□□□□ -0.84
LIG3-202ENST00000378526 TRIM47Q96LD4 638 aa9.77□□□□□ -0.84
LIG3-202ENST00000378526 MMRN2Q9H8L6 949 aa9.77□□□□□ -0.84
LIG3-202ENST00000378526 MYO10Q9HD67 2058 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 MCF2LO15068 1137 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 MSH5O43196 834 aa9.77□□□□□ -0.85
LIG3-202ENST00000378526 SERPINB6P35237 376 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms