RNA–Protein interactions for RNA: ENST00000376659.9

TRIM39-202, Transcript of tripartite motif containing 39, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM39, Length 3,535 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39-202ENST00000376659 TRIM44Q96DX7 344 aaPredicted RBP11.35□□□□□ -0.59
TRIM39-202ENST00000376659 FAM89AQ96GI7 184 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 LRRC2Q9BYS8 371 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 GPHNQ9NQX3 736 aaPredicted RBP11.35□□□□□ -0.59
TRIM39-202ENST00000376659 RCOR1Q9UKL0 485 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 VPS37CA5D8V6 355 aaPredicted RBP11.35□□□□□ -0.59
TRIM39-202ENST00000376659 ZAP70P43403 619 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 KRT85P78386 507 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 STK3Q13188 491 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 DENND2AQ9ULE3 1009 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 PTPDC1A2A3K4 754 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 ERVV-1B6SEH8 477 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 IFIT1P09914 478 aaKnown RBP11.35□□□□□ -0.59
TRIM39-202ENST00000376659 ADD2P35612 726 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 FERMT3Q86UX7 667 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 TEX13AQ9BXU3 409 aaPredicted RBP11.35□□□□□ -0.59
TRIM39-202ENST00000376659 FTOQ9C0B1 505 aaKnown RBP eCLIP11.35□□□□□ -0.59
TRIM39-202ENST00000376659 USP25Q9UHP3 1055 aa11.35□□□□□ -0.59
TRIM39-202ENST00000376659 ZBTB1Q9Y2K1 713 aa11.34□□□□□ -0.59
TRIM39-202ENST00000376659 ADCY5O95622 1261 aa11.34□□□□□ -0.59
TRIM39-202ENST00000376659 SCAND2PQ9GZW5 306 aaPredicted RBP11.34□□□□□ -0.59
TRIM39-202ENST00000376659 PIH1D3Q9NQM4 214 aaKnown RBP11.34□□□□□ -0.59
TRIM39-202ENST00000376659 IQCB1Q15051 598 aa11.34□□□□□ -0.59
TRIM39-202ENST00000376659 CSPP1Q1MSJ5 1256 aa11.34□□□□□ -0.59
TRIM39-202ENST00000376659 TDRD7Q8NHU6 1098 aaKnown RBP11.34□□□□□ -0.59
TRIM39-202ENST00000376659 ZSCAN16Q9H4T2 348 aaPredicted RBP11.34□□□□□ -0.59
TRIM39-202ENST00000376659 BTG4Q9NY30 223 aa11.34□□□□□ -0.59
TRIM39-202ENST00000376659 FGAP02671 866 aa11.33□□□□□ -0.6
TRIM39-202ENST00000376659 TYRO3Q06418 890 aa11.33□□□□□ -0.6
TRIM39-202ENST00000376659 TBC1D10CQ8IV04 446 aa11.33□□□□□ -0.6
TRIM39-202ENST00000376659 PIBF1Q8WXW3 757 aa11.33□□□□□ -0.6
TRIM39-202ENST00000376659 APPBP2Q92624 585 aa11.33□□□□□ -0.6
TRIM39-202ENST00000376659 DDX11Q96FC9 970 aa11.33□□□□□ -0.6
TRIM39-202ENST00000376659 NCOA5Q9HCD5 579 aaKnown RBP11.33□□□□□ -0.6
TRIM39-202ENST00000376659 UBR3Q6ZT12 1888 aa11.33□□□□□ -0.6
TRIM39-202ENST00000376659 NAV1Q8NEY1 1877 aa11.33□□□□□ -0.6
TRIM39-202ENST00000376659 ITGA6P23229 1130 aa11.32□□□□□ -0.6
TRIM39-202ENST00000376659 EIF5P55010 431 aaKnown RBP11.32□□□□□ -0.6
TRIM39-202ENST00000376659 AK7Q96M32 723 aa11.32□□□□□ -0.6
TRIM39-202ENST00000376659 ZFYP08048 801 aaPredicted RBP11.32□□□□□ -0.6
TRIM39-202ENST00000376659 EPB41L4AQ9HCS5 686 aaPredicted RBP11.32□□□□□ -0.6
TRIM39-202ENST00000376659 DACT1Q9NYF0 836 aa11.32□□□□□ -0.6
TRIM39-202ENST00000376659 SPATA31A1Q5TZJ5 1347 aa11.32□□□□□ -0.6
TRIM39-202ENST00000376659 IL6STP40189 918 aaPredicted RBP11.32□□□□□ -0.6
TRIM39-202ENST00000376659 STRN4Q9NRL3 753 aa11.32□□□□□ -0.6
TRIM39-202ENST00000376659 FAM217BQ9NTX9 383 aaPredicted RBP11.32□□□□□ -0.6
TRIM39-202ENST00000376659 KIF28PB7ZC32 967 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 KCNJ4P48050 445 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 QSER1Q2KHR3 1735 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 CYB5R4Q7L1T6 521 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 FAM200AQ8TCP9 573 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 CBX8Q9HC52 389 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 AKAP2Q9Y2D5 859 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 CAMTA2O94983 1202 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 GTF2F1P35269 517 aaKnown RBP eCLIP11.31□□□□□ -0.6
TRIM39-202ENST00000376659 TAF7LQ5H9L4 462 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 SPATA32Q96LK8 384 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 NEUROD6Q96NK8 337 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 DDX19AQ9NUU7 478 aaKnown RBP11.31□□□□□ -0.6
TRIM39-202ENST00000376659 TPM2P07951 284 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 NTRK3Q16288 839 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 ATL3Q6DD88 541 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.31□□□□□ -0.6
TRIM39-202ENST00000376659 USP28Q96RU2 1077 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 MYH1P12882 1939 aa11.31□□□□□ -0.6
TRIM39-202ENST00000376659 IRS2Q9Y4H2 1338 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 PDE8BO95263 885 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 DHX40Q8IX18 779 aaKnown RBP11.3□□□□□ -0.6
TRIM39-202ENST00000376659 FMR1NBQ8N0W7 255 aaPredicted RBP11.3□□□□□ -0.6
TRIM39-202ENST00000376659 TFIP11Q9UBB9 837 aaKnown RBP11.3□□□□□ -0.6
TRIM39-202ENST00000376659 MROH7-TTC4A0A0A0MT08 1334 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 GPAA1O43292 621 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 NTSR2O95665 410 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 UBE3CQ15386 1083 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 ALX1Q15699 326 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 MAP3K11Q16584 847 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 CCDC57Q2TAC2 916 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 NUP62CLQ9H1M0 184 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 SENP2Q9HC62 589 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 RTEL1Q9NZ71 1219 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 ZNF804BA4D1E1 1349 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 FAM237AA0A1B0GTK4 181 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 HMGN5P82970 282 aaKnown RBP11.3□□□□□ -0.6
TRIM39-202ENST00000376659 SARM1Q6SZW1 724 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 KIF6Q6ZMV9 814 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 CHST3Q7LGC8 479 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 KIAA1524Q8TCG1 905 aa11.3□□□□□ -0.6
TRIM39-202ENST00000376659 SH2B2O14492 632 aaPredicted RBP11.29□□□□□ -0.6
TRIM39-202ENST00000376659 CDC25BP30305 580 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 ATP2B3Q16720 1220 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 HSP90AB3PQ58FF7 597 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 CEP126Q9P2H0 1117 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 PYCARDQ9ULZ3 195 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 ZBTB22O15209 634 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 PDE8AO60658 829 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 PHKA1P46020 1223 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 ITPK1Q13572 414 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 C11orf57Q6ZUT1 292 aaPredicted RBP11.29□□□□□ -0.6
TRIM39-202ENST00000376659 IGDCC4Q8TDY8 1250 aa11.29□□□□□ -0.6
TRIM39-202ENST00000376659 WWC3Q9ULE0 1092 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms