RNA–Protein interactions for RNA: ENST00000376634.8

VPS13A-204, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 10,269 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-204ENST00000376634 KRT2P35908 639 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 TTC22Q5TAA0 569 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 FYB2Q5VWT5 728 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 IFT81Q8WYA0 676 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 CCDC42Q96M95 316 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 DNAI1Q9UI46 699 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 MTUS1Q9ULD2 1270 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 SEPT14Q6ZU15 432 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 VPS52Q8N1B4 723 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 UBLCP1Q8WVY7 318 aaPredicted RBP14.04□□□□□ -0.16
VPS13A-204ENST00000376634 NUF2Q9BZD4 464 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 KLF18A0A0U1RQI7 1052 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 TUBB4AP04350 444 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 GIMAP6Q6P9H5 292 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 HS2ST1Q7LGA3 356 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 HAUS2Q9NVX0 235 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 SLC8A3P57103 927 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 INTS8Q75QN2 995 aaKnown RBP14.04□□□□□ -0.16
VPS13A-204ENST00000376634 ZBTB3Q9H5J0 574 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 UQCRFS1P1P0C7P4 283 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 TRIM27P14373 513 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 CCDC65Q8IXS2 484 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 CNGA1P29973 690 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 HSPA1LP34931 641 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 ZNF526Q8TF50 670 aaPredicted RBP14.04□□□□□ -0.16
VPS13A-204ENST00000376634 FAM76AQ8TAV0 307 aa14.04□□□□□ -0.16
VPS13A-204ENST00000376634 C16orf71Q8IYS4 520 aaPredicted RBP14.04□□□□□ -0.16
VPS13A-204ENST00000376634 GABPB2Q8TAK5 448 aaPredicted RBP14.04□□□□□ -0.16
VPS13A-204ENST00000376634 CACYBPQ9HB71 228 aaKnown RBP14.04□□□□□ -0.16
VPS13A-204ENST00000376634 PPP1R9BQ96SB3 815 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 GBP7Q8N8V2 638 aaPredicted RBP14.03□□□□□ -0.16
VPS13A-204ENST00000376634 CNPY2Q9Y2B0 182 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 PLCG2P16885 1265 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 TNNC1P63316 161 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 CLUL1Q15846 466 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 RASA3Q14644 834 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 AOPEPQ8N6M6 819 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 PROCA1Q8NCQ7 364 aaPredicted RBP14.03□□□□□ -0.16
VPS13A-204ENST00000376634 SNRKQ9NRH2 765 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 CUL4BQ13620 913 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 EXOC5O00471 708 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 MICAL3Q7RTP6 2002 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 UAP1Q16222 522 aaPredicted RBP14.03□□□□□ -0.16
VPS13A-204ENST00000376634 CEP85LQ5SZL2 805 aa14.03□□□□□ -0.16
VPS13A-204ENST00000376634 GIPC1O14908 333 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 CASQ2O14958 399 aaPredicted RBP14.02□□□□□ -0.16
VPS13A-204ENST00000376634 FAM200AQ8TCP9 573 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 B4GALNT4Q76KP1 1039 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 VPS18Q9P253 973 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 GUCA1BQ9UMX6 200 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 KRT5P13647 590 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 MARCKSP29966 332 aaPredicted RBP14.02□□□□□ -0.16
VPS13A-204ENST00000376634 CALCOCO2Q13137 446 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 GRM1Q13255 1194 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 CACNA2D3Q8IZS8 1091 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 SLC4A4Q9Y6R1 1079 aa14.02□□□□□ -0.16
VPS13A-204ENST00000376634 PPFIA3O75145 1194 aa14.02□□□□□ -0.17
VPS13A-204ENST00000376634 ARID4AP29374 1257 aaPredicted RBP14.02□□□□□ -0.17
VPS13A-204ENST00000376634 TSHZ3Q63HK5 1081 aa14.02□□□□□ -0.17
VPS13A-204ENST00000376634 GABPAQ06546 454 aa14.02□□□□□ -0.17
VPS13A-204ENST00000376634 KLHL40Q2TBA0 621 aa14.02□□□□□ -0.17
VPS13A-204ENST00000376634 LUC7L2Q9Y383 392 aaKnown RBP14.01□□□□□ -0.17
VPS13A-204ENST00000376634 CYP7A1P22680 504 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 SETDB2Q96T68 719 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 TRIM75PA6NK02 468 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 VCXQ9H320 206 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 ADGRL1O94910 1474 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 STX10O60499 249 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 GNAT2P19087 354 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 ITIH3Q06033 890 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 DCAF17Q5H9S7 520 aaPredicted RBP14.01□□□□□ -0.17
VPS13A-204ENST00000376634 SIRT1Q96EB6 747 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 EIF4G3O43432 1585 aaKnown RBP14.01□□□□□ -0.17
VPS13A-204ENST00000376634 CCDC62Q6P9F0 684 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 UTP11Q9Y3A2 253 aaKnown RBP14.01□□□□□ -0.17
VPS13A-204ENST00000376634 WDR44Q5JSH3 913 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 UBL4BQ8N7F7 174 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 MAGI1Q96QZ7 1491 aaPredicted RBP14.01□□□□□ -0.17
VPS13A-204ENST00000376634 GNA11P29992 359 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 HDXQ7Z353 690 aa14.01□□□□□ -0.17
VPS13A-204ENST00000376634 ATP5J2-PTCD1G3V325 749 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 SRGAP1Q7Z6B7 1085 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 NBPF11Q86T75 865 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 CCDC26Q8TAB7 109 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 CCDC170Q8IYT3 715 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 HMGB1P1B2RPK0 211 aaPredicted RBP14□□□□□ -0.17
VPS13A-204ENST00000376634 EPB41P11171 864 aaKnown RBP14□□□□□ -0.17
VPS13A-204ENST00000376634 NAA16Q6N069 864 aaPredicted RBP14□□□□□ -0.17
VPS13A-204ENST00000376634 A0A1B0GUA9 196 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 PICALMQ13492 652 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 ATP2B3Q16720 1220 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 AKNAD1Q5T1N1 836 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 TACC3Q9Y6A5 838 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 ABCC5O15440 1437 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 SMTNP53814 917 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 CNGA4Q8IV77 575 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 PPFIBP2Q8ND30 876 aa14□□□□□ -0.17
VPS13A-204ENST00000376634 MCM7P33993 719 aa13.99□□□□□ -0.17
VPS13A-204ENST00000376634 BUB1BO60566 1050 aaPredicted RBP13.99□□□□□ -0.17
VPS13A-204ENST00000376634 ZNF853P0CG23 659 aa13.99□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms