RNA–Protein interactions for RNA: ENST00000370573.8

MCF2-202, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene MCF2, Length 2,583 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-202ENST00000370573 RASA1P20936 1047 aa4.71□□□□□ -1.65
MCF2-202ENST00000370573 ARSJQ5FYB0 599 aaPredicted RBP4.71□□□□□ -1.65
MCF2-202ENST00000370573 FAM177A1Q8N128 213 aaPredicted RBP4.71□□□□□ -1.65
MCF2-202ENST00000370573 TRERF1Q96PN7 1200 aa4.71□□□□□ -1.65
MCF2-202ENST00000370573 MAP2P11137 1827 aaKnown RBP4.71□□□□□ -1.66
MCF2-202ENST00000370573 SBNO1A3KN83 1393 aa4.71□□□□□ -1.66
MCF2-202ENST00000370573 PNPLA6Q8IY17 1366 aa4.71□□□□□ -1.66
MCF2-202ENST00000370573 SFI1A8K8P3 1242 aa4.71□□□□□ -1.66
MCF2-202ENST00000370573 BACH1O14867 736 aa4.71□□□□□ -1.66
MCF2-202ENST00000370573 HSP90B1P14625 803 aaKnown RBP4.71□□□□□ -1.66
MCF2-202ENST00000370573 ZNF385CQ66K41 422 aaPredicted RBP4.71□□□□□ -1.66
MCF2-202ENST00000370573 TRIM50Q86XT4 487 aa4.71□□□□□ -1.66
MCF2-202ENST00000370573 PLEKHM2Q8IWE5 1019 aa4.71□□□□□ -1.66
MCF2-202ENST00000370573 TSEN2Q8NCE0 465 aaKnown RBP4.71□□□□□ -1.66
MCF2-202ENST00000370573 ADAMTS8Q9UP79 889 aa4.71□□□□□ -1.66
MCF2-202ENST00000370573 SPATA31A3Q5VYP0 1347 aa4.71□□□□□ -1.66
MCF2-202ENST00000370573 INSRP06213 1382 aa4.71□□□□□ -1.66
MCF2-202ENST00000370573 CDK2AP1O14519 115 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 PPM1GO15355 546 aaPredicted RBP4.7□□□□□ -1.66
MCF2-202ENST00000370573 MX2P20592 715 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 ATP4AP20648 1035 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 ATP1A2P50993 1020 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 MTFR1Q15390 333 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 SH3PXD2AQ5TCZ1 1133 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 LYPD4Q6UWN0 246 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 ZNF295-AS1Q8N0V1 137 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 GAS2L2Q8NHY3 880 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 SCHIP1Q9P0W5 487 aaPredicted RBP4.7□□□□□ -1.66
MCF2-202ENST00000370573 COL3A1P02461 1466 aaPredicted RBP4.7□□□□□ -1.66
MCF2-202ENST00000370573 USP54Q70EL1 1684 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 ALS2Q96Q42 1657 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 MAP3K19Q56UN5 1328 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 SMG6Q86US8 1419 aaKnown RBP4.7□□□□□ -1.66
MCF2-202ENST00000370573 SSFA2P28290 1259 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 SERPINB4P48594 390 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 SRSF11Q05519 484 aaKnown RBP4.7□□□□□ -1.66
MCF2-202ENST00000370573 EFHC2Q5JST6 749 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 SLC9A9Q8IVB4 645 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 ABHD17AQ96GS6 310 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 GMCL1Q96IK5 515 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 ZNF232Q9UNY5 417 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 USP19O94966 1318 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 PEAK1Q9H792 1746 aa4.7□□□□□ -1.66
MCF2-202ENST00000370573 GCP02774 474 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 SLURP2P0DP57 97 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 TXLNAP40222 546 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 ELOAQ14241 798 aaKnown RBP4.69□□□□□ -1.66
MCF2-202ENST00000370573 HSP90AB2PQ58FF8 381 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 CFAP53Q96M91 514 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 TSPAN10Q9H1Z9 355 aaPredicted RBP4.69□□□□□ -1.66
MCF2-202ENST00000370573 MBIPQ9NS73 344 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 NHSL1Q5SYE7 1610 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 SHPRHQ149N8 1683 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 TNS3Q68CZ2 1445 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 NFAT5O94916 1531 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 MED1Q15648 1581 aaPredicted RBP4.69□□□□□ -1.66
MCF2-202ENST00000370573 UBAP1LF5GYI3 381 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 BNIP3LO60238 219 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 TOM1O60784 492 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 IL13P35225 146 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 EPHA4P54764 986 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 PIP4K2BP78356 416 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 UBAP2LQ14157 1087 aaKnown RBP4.69□□□□□ -1.66
MCF2-202ENST00000370573 WDR43Q15061 677 aaKnown RBP eCLIP4.69□□□□□ -1.66
MCF2-202ENST00000370573 CRTC2Q53ET0 693 aaPredicted RBP4.69□□□□□ -1.66
MCF2-202ENST00000370573 BICDL1Q6ZP65 573 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 ZDHHC1Q8WTX9 485 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 KLRG1Q96E93 195 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 NOVA2Q9UNW9 492 aaKnown RBP4.69□□□□□ -1.66
MCF2-202ENST00000370573 ROBO1Q9Y6N7 1651 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 SLIT3O75094 1523 aa4.69□□□□□ -1.66
MCF2-202ENST00000370573 A0A1W2PNR3 127 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 DCDC2BA2VCK2 349 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 DIAPH1O60610 1272 aaKnown RBP4.68□□□□□ -1.66
MCF2-202ENST00000370573 HNRNPUQ00839 825 aaKnown RBP eCLIP4.68□□□□□ -1.66
MCF2-202ENST00000370573 ARHGEF25Q86VW2 580 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 LARGE2Q8N3Y3 721 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 ZCCHC2Q9C0B9 1178 aaKnown RBP4.68□□□□□ -1.66
MCF2-202ENST00000370573 RBM19Q9Y4C8 960 aaKnown RBP4.68□□□□□ -1.66
MCF2-202ENST00000370573 CDK12Q9NYV4 1490 aaPredicted RBP4.68□□□□□ -1.66
MCF2-202ENST00000370573 CDK11BP21127 795 aaKnown RBP4.68□□□□□ -1.66
MCF2-202ENST00000370573 HOXC9P31274 260 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 NOS2P35228 1153 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 AMPHP49418 695 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 TAGLNQ01995 201 aaKnown RBP4.68□□□□□ -1.66
MCF2-202ENST00000370573 EIF4A2Q14240 407 aaKnown RBP4.68□□□□□ -1.66
MCF2-202ENST00000370573 CCDC146Q8IYE0 955 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 KCNH5Q8NCM2 988 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 IP6K1Q92551 441 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 HCN4Q9Y3Q4 1203 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 ARHGEF10O15013 1369 aa4.68□□□□□ -1.66
MCF2-202ENST00000370573 SOWAHDA6NJG2 315 aa4.67□□□□□ -1.66
MCF2-202ENST00000370573 U2SURPO15042 1029 aaKnown RBP4.67□□□□□ -1.66
MCF2-202ENST00000370573 DKK1O94907 266 aa4.67□□□□□ -1.66
MCF2-202ENST00000370573 CELA2BP08218 269 aaPredicted RBP4.67□□□□□ -1.66
MCF2-202ENST00000370573 U2AF1L5P0DN76 240 aaPredicted RBP4.67□□□□□ -1.66
MCF2-202ENST00000370573 TATP17735 454 aaPredicted RBP4.67□□□□□ -1.66
MCF2-202ENST00000370573 ZC3H6P61129 1189 aaKnown RBP4.67□□□□□ -1.66
MCF2-202ENST00000370573 U2AF1Q01081 240 aaKnown RBP eCLIP4.67□□□□□ -1.66
MCF2-202ENST00000370573 FOXK2Q01167 660 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms