RNA–Protein interactions for RNA: ENST00000366304.3

HMGB1P39-201, Transcript of high mobility group box 1 pseudogene 39, humanhuman

BASIC

Gene HMGB1P39, Length 880 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P39-201ENST00000366304 ANGEL1Q9UNK9 670 aaKnown RBP11.18□□□□□ -0.62
HMGB1P39-201ENST00000366304 ALDH1A1P00352 501 aa11.17□□□□□ -0.62
HMGB1P39-201ENST00000366304 MYCP01106 439 aaPredicted RBP11.17□□□□□ -0.62
HMGB1P39-201ENST00000366304 SLC17A8Q8NDX2 589 aa11.17□□□□□ -0.62
HMGB1P39-201ENST00000366304 JARID2Q92833 1246 aaPredicted RBP11.17□□□□□ -0.62
HMGB1P39-201ENST00000366304 ZBED3Q96IU2 234 aaPredicted RBP11.17□□□□□ -0.62
HMGB1P39-201ENST00000366304 WNK4Q96J92 1243 aa11.17□□□□□ -0.62
HMGB1P39-201ENST00000366304 PCGF6Q9BYE7 350 aa11.17□□□□□ -0.62
HMGB1P39-201ENST00000366304 PRO3102Q9H379 93 aa11.17□□□□□ -0.62
HMGB1P39-201ENST00000366304 PCDHAC2Q9Y5I4 1007 aa11.17□□□□□ -0.62
HMGB1P39-201ENST00000366304 AOX1Q06278 1338 aa11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 MANSC4A6NHS7 340 aaPredicted RBP11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 G3V3G9 751 aa11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 ARMC9Q7Z3E5 817 aa11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 TXNRD3Q86VQ6 643 aa11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 PLBD2Q8NHP8 589 aa11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 ERO1AQ96HE7 468 aa11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 CCDC85AQ96PX6 553 aaPredicted RBP11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 EFCC1Q9HA90 598 aa11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 PTCH2Q9Y6C5 1203 aa11.16□□□□□ -0.62
HMGB1P39-201ENST00000366304 LAMA3Q16787 3333 aa11.15□□□□□ -0.62
HMGB1P39-201ENST00000366304 PODNQ7Z5L7 613 aa11.15□□□□□ -0.62
HMGB1P39-201ENST00000366304 SHISA4Q96DD7 197 aa11.15□□□□□ -0.62
HMGB1P39-201ENST00000366304 OCEL1Q9H607 264 aa11.15□□□□□ -0.62
HMGB1P39-201ENST00000366304 SOX1O00570 391 aaPredicted RBP11.14□□□□□ -0.63
HMGB1P39-201ENST00000366304 KLRK1P26718 216 aa11.14□□□□□ -0.63
HMGB1P39-201ENST00000366304 NF2P35240 595 aa11.14□□□□□ -0.63
HMGB1P39-201ENST00000366304 MAP3K11Q16584 847 aa11.14□□□□□ -0.63
HMGB1P39-201ENST00000366304 ANKRD13DQ6ZTN6 518 aa11.14□□□□□ -0.63
HMGB1P39-201ENST00000366304 SLC10A4Q96EP9 437 aa11.14□□□□□ -0.63
HMGB1P39-201ENST00000366304 LAMB1P07942 1786 aa11.13□□□□□ -0.63
HMGB1P39-201ENST00000366304 XDHP47989 1333 aa11.13□□□□□ -0.63
HMGB1P39-201ENST00000366304 ZBTB48P10074 688 aaPredicted RBP11.13□□□□□ -0.63
HMGB1P39-201ENST00000366304 INHBEP58166 350 aa11.13□□□□□ -0.63
HMGB1P39-201ENST00000366304 SP3Q02447 781 aa11.13□□□□□ -0.63
HMGB1P39-201ENST00000366304 TRIM28Q13263 835 aaKnown RBP11.13□□□□□ -0.63
HMGB1P39-201ENST00000366304 SH3TC2Q8TF17 1288 aa11.13□□□□□ -0.63
HMGB1P39-201ENST00000366304 ARHGAP39Q9C0H5 1083 aa11.13□□□□□ -0.63
HMGB1P39-201ENST00000366304 DEFB129Q9H1M3 183 aa11.13□□□□□ -0.63
HMGB1P39-201ENST00000366304 ZSWIM8A7E2V4 1837 aa11.12□□□□□ -0.63
HMGB1P39-201ENST00000366304 TESPA1A2RU30 521 aaPredicted RBP11.12□□□□□ -0.63
HMGB1P39-201ENST00000366304 TRIM26Q12899 539 aaPredicted RBP11.12□□□□□ -0.63
HMGB1P39-201ENST00000366304 KIAA0825Q8IV33 1275 aa11.12□□□□□ -0.63
HMGB1P39-201ENST00000366304 ZBTB38Q8NAP3 1195 aaPredicted RBP11.12□□□□□ -0.63
HMGB1P39-201ENST00000366304 FBXW7Q969H0 707 aa11.12□□□□□ -0.63
HMGB1P39-201ENST00000366304 MS4A4AQ96JQ5 239 aa11.12□□□□□ -0.63
HMGB1P39-201ENST00000366304 TAOK2Q9UL54 1235 aa11.12□□□□□ -0.63
HMGB1P39-201ENST00000366304 ATP2B4P23634 1241 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 SLC4A8Q2Y0W8 1093 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 SLC9C1Q4G0N8 1177 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 NBPF12Q5TAG4 269 aaPredicted RBP11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 STRIP1Q5VSL9 837 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 UBE2Q1Q7Z7E8 422 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 APOBEC3FQ8IUX4 373 aaKnown RBP11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 CDAN1Q8IWY9 1227 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 OGFOD1Q8N543 542 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 CERS5Q8N5B7 392 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 EFCAB3Q8N7B9 438 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 MED23Q9ULK4 1368 aa11.11□□□□□ -0.63
HMGB1P39-201ENST00000366304 CHL1O00533 1208 aa11.1□□□□□ -0.63
HMGB1P39-201ENST00000366304 USP2O75604 605 aaPredicted RBP11.1□□□□□ -0.63
HMGB1P39-201ENST00000366304 RIPK4P57078 832 aa11.1□□□□□ -0.63
HMGB1P39-201ENST00000366304 MTFR1Q15390 333 aa11.1□□□□□ -0.63
HMGB1P39-201ENST00000366304 BRI3BPQ8WY22 251 aa11.1□□□□□ -0.63
HMGB1P39-201ENST00000366304 LRCH3Q96II8 777 aa11.1□□□□□ -0.63
HMGB1P39-201ENST00000366304 MINPP1Q9UNW1 487 aa11.1□□□□□ -0.63
HMGB1P39-201ENST00000366304 CTGFP29279 349 aa11.09□□□□□ -0.63
HMGB1P39-201ENST00000366304 CCDC152Q4G0S7 254 aa11.09□□□□□ -0.63
HMGB1P39-201ENST00000366304 HDGFL1Q5TGJ6 251 aa11.09□□□□□ -0.63
HMGB1P39-201ENST00000366304 ANKRD18AQ8IVF6 992 aa11.09□□□□□ -0.63
HMGB1P39-201ENST00000366304 PDCD7Q8N8D1 485 aaKnown RBP11.09□□□□□ -0.63
HMGB1P39-201ENST00000366304 BABAM1Q9NWV8 329 aa11.09□□□□□ -0.63
HMGB1P39-201ENST00000366304 CLRN2A0PK11 232 aa11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 STK25O00506 426 aa11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 PDE8AO60658 829 aa11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 PCCAP05165 728 aaPredicted RBP11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 CCT4P50991 539 aaKnown RBP11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 TTLL5Q6EMB2 1281 aa11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 FAM43AQ8N2R8 423 aa11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 DPF3Q92784 378 aa11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 PHAXQ9H814 394 aaKnown RBP11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 ELP3Q9H9T3 547 aa11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 STK24Q9Y6E0 443 aa11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 MYO3BQ8WXR4 1341 aa11.08□□□□□ -0.64
HMGB1P39-201ENST00000366304 COL1A1P02452 1464 aaPredicted RBP11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 SNAP23O00161 211 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 TMPOP42166 694 aaKnown RBP11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 GTF2IP78347 998 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 MAMSTRQ6ZN01 415 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 NBPF11Q86T75 865 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 OPTNQ96CV9 577 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 PRMT6Q96LA8 375 aaPredicted RBP11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 MYD88Q99836 296 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 COA1Q9GZY4 146 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 GREM2Q9H772 168 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 SCUBE2Q9NQ36 999 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 DBF4Q9UBU7 674 aaPredicted RBP11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 ZNF804BA4D1E1 1349 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 MAPK8IP3Q9UPT6 1336 aa11.07□□□□□ -0.64
HMGB1P39-201ENST00000366304 IRS2Q9Y4H2 1338 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms