RNA–Protein interactions for RNA: ENST00000359947.8

PTPRF-201, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best) BASIC

Gene PTPRF, Length 7,727 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-201ENST00000359947 NUCB1Q02818 461 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 EP400NLQ6ZTU2 488 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 ABCC1P33527 1531 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 ZBTB9Q96C00 473 aa17.69■□□□□ 0.42
PTPRF-201ENST00000359947 SYCP2Q9BX26 1530 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 HIBADHP31937 336 aaKnown RBP17.68■□□□□ 0.42
PTPRF-201ENST00000359947 TIMM10P62072 90 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 ESPNB1AK53 854 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 PLCB3Q01970 1234 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 CPXCR1Q8N123 301 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 LINS1Q8NG48 757 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 SHTN1A0MZ66 631 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 ZMYND15Q9H091 742 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 RTL9Q8NET4 1388 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 RFX1P22670 979 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 RNF187Q5TA31 235 aaPredicted RBP17.68■□□□□ 0.42
PTPRF-201ENST00000359947 LRRC45Q96CN5 670 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 PDCL2Q8N4E4 241 aa17.68■□□□□ 0.42
PTPRF-201ENST00000359947 AATFQ9NY61 560 aaKnown RBP eCLIP17.68■□□□□ 0.42
PTPRF-201ENST00000359947 NPATQ14207 1427 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 ESYT1Q9BSJ8 1104 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 ZMYM3Q14202 1370 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 TTC6Q86TZ1 520 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 IL16Q14005 1332 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 NOP56O00567 594 aaKnown RBP17.67■□□□□ 0.42
PTPRF-201ENST00000359947 ZSCAN22P10073 491 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-201ENST00000359947 STX17P56962 302 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 A0A1W2PRG0 241 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 TRIM75PA6NK02 468 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 LETM2Q2VYF4 491 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 DCAF17Q5H9S7 520 aaPredicted RBP17.67■□□□□ 0.42
PTPRF-201ENST00000359947 ARMT1Q9H993 441 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 DENND2AQ9ULE3 1009 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 CEP63Q96MT8 703 aa17.67■□□□□ 0.42
PTPRF-201ENST00000359947 A1BGP04217 495 aa17.66■□□□□ 0.42
PTPRF-201ENST00000359947 UBE2HP62256 183 aa17.66■□□□□ 0.42
PTPRF-201ENST00000359947 USH1GQ495M9 461 aa17.66■□□□□ 0.42
PTPRF-201ENST00000359947 KIF2AO00139 706 aaPredicted RBP17.66■□□□□ 0.42
PTPRF-201ENST00000359947 PSMA7O14818 248 aa17.66■□□□□ 0.42
PTPRF-201ENST00000359947 MCM3P25205 808 aa17.66■□□□□ 0.42
PTPRF-201ENST00000359947 EIF4G3O43432 1585 aaKnown RBP17.66■□□□□ 0.42
PTPRF-201ENST00000359947 CCDC169A6NNP5 214 aa17.66■□□□□ 0.42
PTPRF-201ENST00000359947 KLHDC4Q8TBB5 520 aa17.66■□□□□ 0.42
PTPRF-201ENST00000359947 PHACTR3Q96KR7 559 aa17.66■□□□□ 0.42
PTPRF-201ENST00000359947 ARHGEF10LQ9HCE6 1279 aa17.66■□□□□ 0.42
PTPRF-201ENST00000359947 FAM107BQ9H098 131 aa17.65■□□□□ 0.42
PTPRF-201ENST00000359947 CALML3P27482 149 aa17.65■□□□□ 0.42
PTPRF-201ENST00000359947 IFI16Q16666 785 aaKnown RBP17.65■□□□□ 0.42
PTPRF-201ENST00000359947 SPOUT1Q5T280 376 aaKnown RBP17.65■□□□□ 0.42
PTPRF-201ENST00000359947 IP6K1Q92551 441 aa17.65■□□□□ 0.42
PTPRF-201ENST00000359947 GNA11P29992 359 aa17.65■□□□□ 0.42
PTPRF-201ENST00000359947 GNG11P61952 73 aa17.65■□□□□ 0.42
PTPRF-201ENST00000359947 KCNG4Q8TDN1 519 aa17.65■□□□□ 0.42
PTPRF-201ENST00000359947 MAPK8IP2Q13387 824 aaPredicted RBP17.65■□□□□ 0.42
PTPRF-201ENST00000359947 CCDC129Q6ZRS4 1044 aa17.65■□□□□ 0.42
PTPRF-201ENST00000359947 DTHD1Q6ZMT9 781 aa17.65■□□□□ 0.42
PTPRF-201ENST00000359947 KRT5P13647 590 aa17.64■□□□□ 0.42
PTPRF-201ENST00000359947 ANO6Q4KMQ2 910 aa17.64■□□□□ 0.42
PTPRF-201ENST00000359947 SH2D4AQ9H788 454 aa17.64■□□□□ 0.42
PTPRF-201ENST00000359947 BMP15O95972 392 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 SNW1Q13573 536 aaKnown RBP17.64■□□□□ 0.41
PTPRF-201ENST00000359947 CTR9Q6PD62 1173 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 CCDC117Q8IWD4 279 aaPredicted RBP17.64■□□□□ 0.41
PTPRF-201ENST00000359947 HS2ST1Q7LGA3 356 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 RAPGEF6Q8TEU7 1601 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 GSDMDP57764 484 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 ZNF174Q15697 407 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 CEP135Q66GS9 1140 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 TRIM6Q9C030 488 aaPredicted RBP17.64■□□□□ 0.41
PTPRF-201ENST00000359947 ZNF518AQ6AHZ1 1483 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 ZNF790Q6PG37 636 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 NIM1KQ8IY84 436 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 ANKRD44Q8N8A2 993 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 TNNQ9UQP3 1299 aa17.64■□□□□ 0.41
PTPRF-201ENST00000359947 BIRC3Q13489 604 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 ARHGAP27Q6ZUM4 889 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 PRDM1O75626 825 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 DNM1Q05193 864 aaKnown RBP17.63■□□□□ 0.41
PTPRF-201ENST00000359947 CCDC63Q8NA47 563 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 CCDC87Q9NVE4 849 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 B4E1Z4 1266 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 SMCR8Q8TEV9 937 aaPredicted RBP17.63■□□□□ 0.41
PTPRF-201ENST00000359947 PLVAPQ9BX97 442 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 A0A1B0GUL7 405 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 BAG6P46379 1132 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 RNF34Q969K3 372 aa17.63■□□□□ 0.41
PTPRF-201ENST00000359947 GPATCH8Q9UKJ3 1502 aaKnown RBP17.62■□□□□ 0.41
PTPRF-201ENST00000359947 CEP83Q9Y592 693 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 CCNT1O60563 726 aaKnown RBP17.62■□□□□ 0.41
PTPRF-201ENST00000359947 ZSCAN30Q86W11 494 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 PCDHB15Q9Y5E8 787 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 MAP3K19Q56UN5 1328 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 NDC80O14777 642 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 PPIP5K2O43314 1243 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 SORBS3O60504 671 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 CCDC175P0C221 793 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 TCIRG1Q13488 830 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 RAPGEF1Q13905 1077 aa17.62■□□□□ 0.41
PTPRF-201ENST00000359947 BRDTQ58F21 947 aaPredicted RBP17.62■□□□□ 0.41
PTPRF-201ENST00000359947 ZNF526Q8TF50 670 aaPredicted RBP17.62■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms