RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 FGFR1OPO95684 399 aaKnown RBP8.37□□□□□ -1.07
VPS13A-202ENST00000357409 DNAJC10Q8IXB1 793 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 AOPEPQ8N6M6 819 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 BNIP3LO60238 219 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 QTRT2Q9H974 415 aaKnown RBP8.37□□□□□ -1.07
VPS13A-202ENST00000357409 PICK1Q9NRD5 415 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 CD109Q6YHK3 1445 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 INCENPQ9NQS7 918 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 GOLGA8CPA6NN73 597 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 IL2RBP14784 551 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 GOLGA8FQ08AF8 430 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 GOLGA8DPQ0D2H9 430 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 BIRC3Q13489 604 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 CCDC91Q7Z6B0 441 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 TNPO1Q92973 898 aaKnown RBP8.37□□□□□ -1.07
VPS13A-202ENST00000357409 TMOD4Q9NZQ9 345 aa8.37□□□□□ -1.07
VPS13A-202ENST00000357409 DAPK3O43293 454 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 GNG11P61952 73 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 CCDC12Q8WUD4 166 aaPredicted RBP8.36□□□□□ -1.07
VPS13A-202ENST00000357409 RNF41Q9H4P4 317 aaPredicted RBP8.36□□□□□ -1.07
VPS13A-202ENST00000357409 LIMCH1Q9UPQ0 1083 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 USO1O60763 962 aaKnown RBP8.36□□□□□ -1.07
VPS13A-202ENST00000357409 NUMBP49757 651 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 ANO6Q4KMQ2 910 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 DDX23Q9BUQ8 820 aaKnown RBP8.36□□□□□ -1.07
VPS13A-202ENST00000357409 TESPA1A2RU30 521 aaPredicted RBP8.36□□□□□ -1.07
VPS13A-202ENST00000357409 CAPN15O75808 1086 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 SDR42E1Q8WUS8 393 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 TBC1D2Q9BYX2 928 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 BEND3Q5T5X7 828 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 PIK3AP1Q6ZUJ8 805 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 SULF1Q8IWU6 871 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 TRIM31Q9BZY9 425 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 CCDC160A6NGH7 325 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 NOP56O00567 594 aaKnown RBP8.36□□□□□ -1.07
VPS13A-202ENST00000357409 HIBADHP31937 336 aaKnown RBP8.36□□□□□ -1.07
VPS13A-202ENST00000357409 PHKBQ93100 1093 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 GTF3C6Q969F1 213 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 TMX3Q96JJ7 454 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 BSPRYQ5W0U4 402 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 SCYL2Q6P3W7 929 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 SPICE1Q8N0Z3 855 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 ZGPATQ8N5A5 531 aaKnown RBP8.36□□□□□ -1.07
VPS13A-202ENST00000357409 DACT1Q9NYF0 836 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 MSH6P52701 1360 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 A0A087WWV3 80 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 SYKP43405 635 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 CFAP58Q5T655 872 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 DBNDD1Q9H9R9 158 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 KCNK9Q9NPC2 374 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 PCDHB15Q9Y5E8 787 aa8.36□□□□□ -1.07
VPS13A-202ENST00000357409 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP8.35□□□□□ -1.07
VPS13A-202ENST00000357409 SKIV2LQ15477 1246 aaKnown RBP8.35□□□□□ -1.07
VPS13A-202ENST00000357409 PPANQ9NQ55 473 aaKnown RBP8.35□□□□□ -1.07
VPS13A-202ENST00000357409 CEP83Q9Y592 693 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 SLC4A1P02730 911 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 AMPD3Q01432 767 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 NCBP1Q09161 790 aaKnown RBP8.35□□□□□ -1.07
VPS13A-202ENST00000357409 MCM6Q14566 821 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 ARHGAP44Q17R89 818 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 LRRC47Q8N1G4 583 aaKnown RBP8.35□□□□□ -1.07
VPS13A-202ENST00000357409 PPME1Q9Y570 386 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 MAN1A1P33908 653 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 MCMDC2Q4G0Z9 681 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 FNBP1Q96RU3 617 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 AGTPBP1Q9UPW5 1226 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 IVNS1ABPQ9Y6Y0 642 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 AKR1B10O60218 316 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 SFPQP23246 707 aaKnown RBP eCLIP8.35□□□□□ -1.07
VPS13A-202ENST00000357409 MARCH10Q8NA82 808 aaPredicted RBP8.35□□□□□ -1.07
VPS13A-202ENST00000357409 PGBD1Q96JS3 809 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 PHACTR3Q96KR7 559 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 POLD4Q9HCU8 107 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 USP48Q86UV5 1035 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 POLKQ9UBT6 870 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 YEATS4O95619 227 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 KIAA0753Q2KHM9 967 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 KCNJ14Q9UNX9 436 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 V9GY48 417 aaPredicted RBP8.35□□□□□ -1.07
VPS13A-202ENST00000357409 ZNF804AQ7Z570 1209 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 TTC12Q9H892 705 aaPredicted RBP8.35□□□□□ -1.07
VPS13A-202ENST00000357409 PAG1Q9NWQ8 432 aa8.35□□□□□ -1.07
VPS13A-202ENST00000357409 MCM5P33992 734 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 BLZF1Q9H2G9 400 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 SAT1P21673 171 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 ADAT2Q7Z6V5 191 aaKnown RBP8.34□□□□□ -1.07
VPS13A-202ENST00000357409 DCLK2Q8N568 766 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 ACTN2P35609 894 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 UHMK1Q8TAS1 419 aaKnown RBP8.34□□□□□ -1.07
VPS13A-202ENST00000357409 RRP36Q96EU6 259 aaKnown RBP8.34□□□□□ -1.07
VPS13A-202ENST00000357409 FAM227BQ96M60 508 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 ABT1Q9ULW3 272 aaKnown RBP8.34□□□□□ -1.07
VPS13A-202ENST00000357409 NCOA2Q15596 1464 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 FGD6Q6ZV73 1430 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 PDCL2Q8N4E4 241 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 FAM200AQ8TCP9 573 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 DBNDD2Q9BQY9 259 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 NACADO15069 1562 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 SYNDIG1LA6NDD5 238 aa8.34□□□□□ -1.07
VPS13A-202ENST00000357409 RHOXF2BP0C7M4 288 aa8.34□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms