RNA–Protein interactions for RNA: ENST00000351487.5

UPF3A-201, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

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Gene UPF3A, Length 2,235 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-201ENST00000351487 IRS4O14654 1257 aaPredicted RBP25.96■■□□□ 1.75
UPF3A-201ENST00000351487 ANO6Q4KMQ2 910 aa25.96■■□□□ 1.75
UPF3A-201ENST00000351487 ZSCAN25Q6NSZ9 544 aa25.96■■□□□ 1.75
UPF3A-201ENST00000351487 ZNF396Q96N95 335 aaPredicted RBP25.96■■□□□ 1.75
UPF3A-201ENST00000351487 TPM3P06753 285 aa25.96■■□□□ 1.75
UPF3A-201ENST00000351487 HAND2P61296 217 aa25.96■■□□□ 1.75
UPF3A-201ENST00000351487 TTC12Q9H892 705 aaPredicted RBP25.96■■□□□ 1.75
UPF3A-201ENST00000351487 NAP1L2Q9ULW6 460 aaPredicted RBP25.96■■□□□ 1.75
UPF3A-201ENST00000351487 COL16A1Q07092 1604 aaPredicted RBP25.96■■□□□ 1.75
UPF3A-201ENST00000351487 FDPSP14324 419 aaKnown RBP25.95■■□□□ 1.75
UPF3A-201ENST00000351487 ADD2P35612 726 aa25.95■■□□□ 1.75
UPF3A-201ENST00000351487 PLCB2Q00722 1185 aa25.95■■□□□ 1.75
UPF3A-201ENST00000351487 TTF1Q15361 905 aaPredicted RBP25.95■■□□□ 1.75
UPF3A-201ENST00000351487 NCOA7Q8NI08 942 aa25.95■■□□□ 1.75
UPF3A-201ENST00000351487 USP28Q96RU2 1077 aa25.95■■□□□ 1.75
UPF3A-201ENST00000351487 CNNM1Q9NRU3 951 aa25.95■■□□□ 1.75
UPF3A-201ENST00000351487 DOT1LQ8TEK3 1739 aa25.95■■□□□ 1.74
UPF3A-201ENST00000351487 COL22A1Q8NFW1 1626 aaPredicted RBP25.95■■□□□ 1.74
UPF3A-201ENST00000351487 PRC1O43663 620 aa25.95■■□□□ 1.74
UPF3A-201ENST00000351487 PDE8AO60658 829 aa25.95■■□□□ 1.74
UPF3A-201ENST00000351487 ZNF830Q96NB3 372 aaPredicted RBP25.95■■□□□ 1.74
UPF3A-201ENST00000351487 CBX8Q9HC52 389 aa25.95■■□□□ 1.74
UPF3A-201ENST00000351487 KAT6BQ8WYB5 2073 aa25.95■■□□□ 1.74
UPF3A-201ENST00000351487 C4AP0C0L4 1744 aa25.94■■□□□ 1.74
UPF3A-201ENST00000351487 C4BP0C0L5 1744 aa25.94■■□□□ 1.74
UPF3A-201ENST00000351487 CAVIN2O95810 425 aa25.94■■□□□ 1.74
UPF3A-201ENST00000351487 ILDR1Q86SU0 546 aaPredicted RBP25.94■■□□□ 1.74
UPF3A-201ENST00000351487 LUZP1Q86V48 1076 aa25.94■■□□□ 1.74
UPF3A-201ENST00000351487 PDE8BO95263 885 aa25.94■■□□□ 1.74
UPF3A-201ENST00000351487 IL6STP40189 918 aaPredicted RBP25.94■■□□□ 1.74
UPF3A-201ENST00000351487 ANTXR2P58335 489 aa25.94■■□□□ 1.74
UPF3A-201ENST00000351487 SASS6Q6UVJ0 657 aa25.94■■□□□ 1.74
UPF3A-201ENST00000351487 MPNDQ8N594 471 aa25.94■■□□□ 1.74
UPF3A-201ENST00000351487 GPHNQ9NQX3 736 aaPredicted RBP25.94■■□□□ 1.74
UPF3A-201ENST00000351487 TRMT112Q9UI30 125 aaKnown RBP25.94■■□□□ 1.74
UPF3A-201ENST00000351487 DHX16O60231 1041 aaKnown RBP25.93■■□□□ 1.74
UPF3A-201ENST00000351487 FOSBP53539 338 aa25.93■■□□□ 1.74
UPF3A-201ENST00000351487 TDRD7Q8NHU6 1098 aaKnown RBP25.93■■□□□ 1.74
UPF3A-201ENST00000351487 ZNF213O14771 459 aa25.92■■□□□ 1.74
UPF3A-201ENST00000351487 CTAGE5O15320 804 aa25.92■■□□□ 1.74
UPF3A-201ENST00000351487 FTOQ9C0B1 505 aaKnown RBP eCLIP25.92■■□□□ 1.74
UPF3A-201ENST00000351487 HPS5Q9UPZ3 1129 aa25.92■■□□□ 1.74
UPF3A-201ENST00000351487 GOLGA6L6A8MZA4 724 aa25.92■■□□□ 1.74
UPF3A-201ENST00000351487 ARID4AP29374 1257 aaPredicted RBP25.92■■□□□ 1.74
UPF3A-201ENST00000351487 CEBPZQ03701 1054 aaKnown RBP25.92■■□□□ 1.74
UPF3A-201ENST00000351487 UBE3CQ15386 1083 aa25.92■■□□□ 1.74
UPF3A-201ENST00000351487 RALYLQ86SE5 291 aaKnown RBP25.92■■□□□ 1.74
UPF3A-201ENST00000351487 SPTLC3Q9NUV7 552 aa25.92■■□□□ 1.74
UPF3A-201ENST00000351487 UBN2Q6ZU65 1347 aa25.92■■□□□ 1.74
UPF3A-201ENST00000351487 SLIT2O94813 1529 aa25.91■■□□□ 1.74
UPF3A-201ENST00000351487 DOCK2Q92608 1830 aa25.91■■□□□ 1.74
UPF3A-201ENST00000351487 KLF18A0A0U1RQI7 1052 aa25.91■■□□□ 1.74
UPF3A-201ENST00000351487 NOLC1Q14978 699 aaKnown RBP eCLIP25.91■■□□□ 1.74
UPF3A-201ENST00000351487 DZIP3Q86Y13 1208 aaKnown RBP25.91■■□□□ 1.74
UPF3A-201ENST00000351487 CCAR1Q8IX12 1150 aaKnown RBP25.91■■□□□ 1.74
UPF3A-201ENST00000351487 ZNF34Q8IZ26 560 aa25.91■■□□□ 1.74
UPF3A-201ENST00000351487 RRP9O43818 475 aaKnown RBP25.9■■□□□ 1.74
UPF3A-201ENST00000351487 AK7Q96M32 723 aa25.9■■□□□ 1.74
UPF3A-201ENST00000351487 GOLGA8BA8MQT2 603 aa25.9■■□□□ 1.74
UPF3A-201ENST00000351487 SLC9C2Q5TAH2 1124 aa25.9■■□□□ 1.74
UPF3A-201ENST00000351487 RGS22Q8NE09 1264 aa25.9■■□□□ 1.74
UPF3A-201ENST00000351487 EXOC5O00471 708 aa25.89■■□□□ 1.74
UPF3A-201ENST00000351487 UQCRFS1P1P0C7P4 283 aa25.89■■□□□ 1.74
UPF3A-201ENST00000351487 ZNF165P49910 485 aa25.89■■□□□ 1.74
UPF3A-201ENST00000351487 GUCY1B3Q02153 619 aa25.89■■□□□ 1.74
UPF3A-201ENST00000351487 CCDC102BQ68D86 513 aa25.89■■□□□ 1.74
UPF3A-201ENST00000351487 NBPF3Q9H094 633 aa25.89■■□□□ 1.74
UPF3A-201ENST00000351487 GOLPH3LQ9H4A5 285 aa25.89■■□□□ 1.74
UPF3A-201ENST00000351487 PIH1D3Q9NQM4 214 aaKnown RBP25.89■■□□□ 1.74
UPF3A-201ENST00000351487 SNW1Q13573 536 aaKnown RBP25.88■■□□□ 1.73
UPF3A-201ENST00000351487 CCDC73Q6ZRK6 1079 aa25.88■■□□□ 1.73
UPF3A-201ENST00000351487 ENGASEQ8NFI3 743 aa25.88■■□□□ 1.73
UPF3A-201ENST00000351487 RTEL1Q9NZ71 1219 aa25.88■■□□□ 1.73
UPF3A-201ENST00000351487 MROH5Q6ZUA9 1318 aa25.88■■□□□ 1.73
UPF3A-201ENST00000351487 FGFR2P21802 821 aa25.88■■□□□ 1.73
UPF3A-201ENST00000351487 PUM3Q15397 648 aaKnown RBP25.88■■□□□ 1.73
UPF3A-201ENST00000351487 KCNF1Q9H3M0 494 aa25.88■■□□□ 1.73
UPF3A-201ENST00000351487 RREB1Q92766 1687 aa25.87■■□□□ 1.73
UPF3A-201ENST00000351487 PHKA1P46020 1223 aa25.87■■□□□ 1.73
UPF3A-201ENST00000351487 FAM160A1Q05DH4 1040 aa25.87■■□□□ 1.73
UPF3A-201ENST00000351487 DNAJC25Q9H1X3 360 aa25.87■■□□□ 1.73
UPF3A-201ENST00000351487 PPFIA3O75145 1194 aa25.87■■□□□ 1.73
UPF3A-201ENST00000351487 FBXO18Q8NFZ0 1043 aa25.87■■□□□ 1.73
UPF3A-201ENST00000351487 LPIN2Q92539 896 aa25.87■■□□□ 1.73
UPF3A-201ENST00000351487 C8orf76Q96K31 380 aa25.87■■□□□ 1.73
UPF3A-201ENST00000351487 TBC1D2BQ9UPU7 963 aa25.87■■□□□ 1.73
UPF3A-201ENST00000351487 AHDC1Q5TGY3 1603 aaPredicted RBP25.87■■□□□ 1.73
UPF3A-201ENST00000351487 PHLPP1O60346 1717 aa25.86■■□□□ 1.73
UPF3A-201ENST00000351487 UQCRHLA0A096LP55 91 aa25.86■■□□□ 1.73
UPF3A-201ENST00000351487 KDM4FA0A1W2PPD8 638 aa25.86■■□□□ 1.73
UPF3A-201ENST00000351487 UQCRHP07919 91 aa25.86■■□□□ 1.73
UPF3A-201ENST00000351487 ARHGAP30Q7Z6I6 1101 aaPredicted RBP25.86■■□□□ 1.73
UPF3A-201ENST00000351487 PLA2G4DQ86XP0 818 aa25.86■■□□□ 1.73
UPF3A-201ENST00000351487 CICQ96RK0 1608 aaPredicted RBP25.86■■□□□ 1.73
UPF3A-201ENST00000351487 TRDNQ13061 729 aa25.86■■□□□ 1.73
UPF3A-201ENST00000351487 KIAA1524Q8TCG1 905 aa25.86■■□□□ 1.73
UPF3A-201ENST00000351487 SYTL4Q96C24 671 aaPredicted RBP25.86■■□□□ 1.73
UPF3A-201ENST00000351487 ORC3Q9UBD5 711 aaPredicted RBP25.86■■□□□ 1.73
UPF3A-201ENST00000351487 CHD4Q14839 1912 aa25.85■■□□□ 1.73
UPF3A-201ENST00000351487 ZMYM6O95789 1325 aa25.85■■□□□ 1.73
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms