RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 PKN2Q16513 984 aaKnown RBP9.74□□□□□ -0.85
HMGB1-203ENST00000341423 ZNF215Q9UL58 517 aaPredicted RBP9.74□□□□□ -0.85
HMGB1-203ENST00000341423 PHACTR2O75167 634 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 CYP2B6P20813 491 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 IL15P40933 162 aaPredicted RBP9.73□□□□□ -0.85
HMGB1-203ENST00000341423 CCDC157Q569K6 752 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 ERICH6BQ5W0A0 696 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 MCF2L2Q86YR7 1114 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 TSHZ2Q9NRE2 1034 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.73□□□□□ -0.85
HMGB1-203ENST00000341423 IMPG2Q9BZV3 1241 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 PODNQ7Z5L7 613 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 SNRKQ9NRH2 765 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP9.73□□□□□ -0.856e-7■■□□□ 13.1
HMGB1-203ENST00000341423 LMCD1Q9NZU5 365 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 CPS1P31327 1500 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 TCOF1Q13428 1488 aaKnown RBP9.73□□□□□ -0.85
HMGB1-203ENST00000341423 MAP3K19Q56UN5 1328 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 CALM1P0DP23 149 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 CALM2P0DP24 149 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 CALM3P0DP25 149 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 SLC1A4P43007 532 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 CTU1Q7Z7A3 348 aaKnown RBP9.73□□□□□ -0.85
HMGB1-203ENST00000341423 GOLGA1Q92805 767 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 UBA5Q9GZZ9 404 aa9.73□□□□□ -0.85
HMGB1-203ENST00000341423 HMX1Q9NP08 348 aaPredicted RBP9.73□□□□□ -0.85
HMGB1-203ENST00000341423 SOX10P56693 466 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 AOC3Q16853 763 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 RGMBQ6NW40 437 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 SPATA31A5Q5VU36 1347 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 SPATA31A7Q8IWB4 1347 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 CFAP58Q5T655 872 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 ZNF697Q5TEC3 545 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 ERCC6L2Q5T890 1561 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 SYCP2Q9BX26 1530 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 CETN1Q12798 172 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 FBXO40Q9UH90 709 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 G3BP2Q9UN86 482 aaKnown RBP9.72□□□□□ -0.85
HMGB1-203ENST00000341423 ZHX2Q9Y6X8 837 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 TTC37Q6PGP7 1564 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 SPATA31A1Q5TZJ5 1347 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 ANKRD62A6NC57 917 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 GMPSP49915 693 aaPredicted RBP9.72□□□□□ -0.85
HMGB1-203ENST00000341423 ATN1P54259 1190 aaPredicted RBP9.72□□□□□ -0.85
HMGB1-203ENST00000341423 STIM1Q13586 685 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 PTPROQ16827 1216 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 USP50Q70EL3 339 aaPredicted RBP9.72□□□□□ -0.85
HMGB1-203ENST00000341423 CDAN1Q8IWY9 1227 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 ASAP1Q9ULH1 1129 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 U3KPZ7 1027 aaPredicted RBP9.72□□□□□ -0.85
HMGB1-203ENST00000341423 ADAMTS12P58397 1594 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 PRAMEF22A3QJZ6 481 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 ALAS1P13196 640 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 TMPOP42166 694 aaKnown RBP9.72□□□□□ -0.85
HMGB1-203ENST00000341423 DCTN1Q14203 1278 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 TRMT44Q8IYL2 757 aaKnown RBP9.72□□□□□ -0.85
HMGB1-203ENST00000341423 FERMT1Q9BQL6 677 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 C22orf23Q9BZE7 217 aa9.72□□□□□ -0.85
HMGB1-203ENST00000341423 RNF123Q5XPI4 1314 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 ARAP3Q8WWN8 1544 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 PSMD2Q13200 908 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 RPUSD2Q8IZ73 545 aaKnown RBP9.71□□□□□ -0.85
HMGB1-203ENST00000341423 CCDC191Q8NCU4 936 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 ARHGEF1Q92888 912 aaKnown RBP9.71□□□□□ -0.85
HMGB1-203ENST00000341423 COA1Q9GZY4 146 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 CARMIL3Q8ND23 1372 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 PTCH1Q13635 1447 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 PI4KAP2A4QPH2 592 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 SYCP3Q8IZU3 236 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 PI4KAP1Q8N8J0 262 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 SDF4Q9BRK5 362 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 UPF3BQ9BZI7 483 aaKnown RBP9.71□□□□□ -0.85
HMGB1-203ENST00000341423 DPP7Q9UHL4 492 aa9.71□□□□□ -0.85
HMGB1-203ENST00000341423 SP3Q02447 781 aa9.71□□□□□ -0.86
HMGB1-203ENST00000341423 MFSD6Q6ZSS7 791 aa9.71□□□□□ -0.86
HMGB1-203ENST00000341423 FNBP4Q8N3X1 1017 aaPredicted RBP9.71□□□□□ -0.86
HMGB1-203ENST00000341423 RBM46Q8TBY0 533 aaKnown RBP9.71□□□□□ -0.86
HMGB1-203ENST00000341423 IRS2Q9Y4H2 1338 aa9.71□□□□□ -0.86
HMGB1-203ENST00000341423 FARP2O94887 1054 aaPredicted RBP9.71□□□□□ -0.86
HMGB1-203ENST00000341423 ZNF569Q5MCW4 686 aa9.71□□□□□ -0.86
HMGB1-203ENST00000341423 JARID2Q92833 1246 aaPredicted RBP9.71□□□□□ -0.86
HMGB1-203ENST00000341423 KIFC2Q96AC6 838 aa9.71□□□□□ -0.86
HMGB1-203ENST00000341423 SAP30BPQ9UHR5 308 aaKnown RBP9.71□□□□□ -0.86
HMGB1-203ENST00000341423 SLC4A4Q9Y6R1 1079 aa9.71□□□□□ -0.86
HMGB1-203ENST00000341423 ZNF213O14771 459 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 DDNO94850 711 aaPredicted RBP9.7□□□□□ -0.86
HMGB1-203ENST00000341423 CCDC181Q5TID7 509 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 CLEC4GQ6UXB4 293 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 TMEM39AQ9NV64 488 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 HOXC10Q9NYD6 342 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 NUB1Q9Y5A7 615 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 PLSCR1O15162 318 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 RGS2P41220 211 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 FOSBP53539 338 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 PLBD2Q8NHP8 589 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 ESR2Q92731 530 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 SYMPKQ92797 1274 aaKnown RBP9.7□□□□□ -0.86
HMGB1-203ENST00000341423 EYA1Q99502 592 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 UBE2Q2LH0YL09 131 aa9.7□□□□□ -0.86
HMGB1-203ENST00000341423 ANXA1P04083 346 aa9.7□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms