RNA–Protein interactions for RNA: ENST00000338850.5

RTN3-201, Transcript of reticulon 3, humanhuman

TSL 2

Gene RTN3, Length 493 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-201ENST00000338850 COPRSQ9NQ92 184 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 SMC3Q9UQE7 1217 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 CYP46A1Q9Y6A2 500 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 ZNF541Q9H0D2 1346 aa12.83□□□□□ -0.36
RTN3-201ENST00000338850 SYCE3A1L190 88 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 RRP9O43818 475 aaKnown RBP12.82□□□□□ -0.36
RTN3-201ENST00000338850 POTEIP0CG38 1075 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 POTEJP0CG39 1038 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 IARSP41252 1262 aaKnown RBP12.82□□□□□ -0.36
RTN3-201ENST00000338850 RABL6Q3YEC7 729 aaPredicted RBP12.82□□□□□ -0.36
RTN3-201ENST00000338850 IFFO2Q5TF58 517 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 CC2D2BQ6DHV5 1058 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 COPS6Q7L5N1 327 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 RASEFQ8IZ41 740 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 XAGE3Q8WTP9 111 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 CRAMP1Q96RY5 1269 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 PSMD1Q99460 953 aa12.82□□□□□ -0.36
RTN3-201ENST00000338850 SYT1P21579 422 aa12.81□□□□□ -0.36
RTN3-201ENST00000338850 CACNB1Q02641 598 aaPredicted RBP12.81□□□□□ -0.36
RTN3-201ENST00000338850 NEXNQ0ZGT2 675 aa12.81□□□□□ -0.36
RTN3-201ENST00000338850 G3BP1Q13283 466 aaKnown RBP eCLIP12.81□□□□□ -0.36
RTN3-201ENST00000338850 KRT32Q14532 448 aa12.81□□□□□ -0.36
RTN3-201ENST00000338850 SLC10A5Q5PT55 438 aa12.81□□□□□ -0.36
RTN3-201ENST00000338850 CHADLQ6NUI6 762 aa12.81□□□□□ -0.36
RTN3-201ENST00000338850 SLC51AQ86UW1 340 aa12.81□□□□□ -0.36
RTN3-201ENST00000338850 RBM17Q96I25 401 aaKnown RBP12.81□□□□□ -0.36
RTN3-201ENST00000338850 KAZALD1Q96I82 304 aa12.81□□□□□ -0.36
RTN3-201ENST00000338850 NAP1L5Q96NT1 182 aaPredicted RBP12.81□□□□□ -0.36
RTN3-201ENST00000338850 METTL22Q9BUU2 404 aaPredicted RBP12.81□□□□□ -0.36
RTN3-201ENST00000338850 UTP14AQ9BVJ6 771 aaKnown RBP12.81□□□□□ -0.36
RTN3-201ENST00000338850 RBM27Q9P2N5 1060 aaKnown RBP12.81□□□□□ -0.36
RTN3-201ENST00000338850 LAMA4Q16363 1823 aa12.81□□□□□ -0.36
RTN3-201ENST00000338850 DDX60Q8IY21 1712 aaKnown RBP12.8□□□□□ -0.36
RTN3-201ENST00000338850 IQCA1LA6NCM1 817 aa12.8□□□□□ -0.36
RTN3-201ENST00000338850 FZD9O00144 591 aa12.8□□□□□ -0.36
RTN3-201ENST00000338850 SASH1O94885 1247 aa12.8□□□□□ -0.36
RTN3-201ENST00000338850 AIMP1Q12904 312 aaKnown RBP12.8□□□□□ -0.36
RTN3-201ENST00000338850 CWC27Q6UX04 472 aaKnown RBP12.8□□□□□ -0.36
RTN3-201ENST00000338850 USP48Q86UV5 1035 aa12.8□□□□□ -0.36
RTN3-201ENST00000338850 SUCLG2Q96I99 432 aa12.8□□□□□ -0.36
RTN3-201ENST00000338850 TAF1DQ9H5J8 278 aaPredicted RBP12.8□□□□□ -0.36
RTN3-201ENST00000338850 PDRG1Q9NUG6 133 aa12.8□□□□□ -0.36
RTN3-201ENST00000338850 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.8□□□□□ -0.36
RTN3-201ENST00000338850 NSFL1CQ9UNZ2 370 aaKnown RBP12.8□□□□□ -0.36
RTN3-201ENST00000338850 NEURL1BA8MQ27 555 aa12.79□□□□□ -0.36
RTN3-201ENST00000338850 PPEF1O14829 653 aaPredicted RBP12.79□□□□□ -0.36
RTN3-201ENST00000338850 CASTP20810 708 aaKnown RBP12.79□□□□□ -0.36
RTN3-201ENST00000338850 GRIPAP1Q4V328 841 aa12.79□□□□□ -0.36
RTN3-201ENST00000338850 HSP90AB3PQ58FF7 597 aa12.79□□□□□ -0.36
RTN3-201ENST00000338850 AACSQ86V21 672 aa12.79□□□□□ -0.36
RTN3-201ENST00000338850 NLRP10Q86W26 655 aa12.79□□□□□ -0.36
RTN3-201ENST00000338850 NLRP3Q96P20 1036 aa12.79□□□□□ -0.36
RTN3-201ENST00000338850 FUCA2Q9BTY2 467 aa12.79□□□□□ -0.36
RTN3-201ENST00000338850 MTMR6Q9Y217 621 aa12.79□□□□□ -0.36
RTN3-201ENST00000338850 COL4A5P29400 1685 aa12.79□□□□□ -0.36
RTN3-201ENST00000338850 IGKV5-2P06315 115 aa12.78□□□□□ -0.36
RTN3-201ENST00000338850 TPM3P06753 285 aa12.78□□□□□ -0.36
RTN3-201ENST00000338850 ATP5JP18859 108 aa12.78□□□□□ -0.36
RTN3-201ENST00000338850 TCIRG1Q13488 830 aa12.78□□□□□ -0.36
RTN3-201ENST00000338850 GCKRQ14397 625 aa12.78□□□□□ -0.36
RTN3-201ENST00000338850 CREB3L3Q68CJ9 461 aa12.78□□□□□ -0.36
RTN3-201ENST00000338850 LDHDQ86WU2 507 aa12.78□□□□□ -0.36
RTN3-201ENST00000338850 EAF2Q96CJ1 260 aaPredicted RBP12.78□□□□□ -0.36
RTN3-201ENST00000338850 BICC1Q9H694 974 aaKnown RBP12.78□□□□□ -0.36
RTN3-201ENST00000338850 GPR108Q9NPR9 543 aa12.78□□□□□ -0.36
RTN3-201ENST00000338850 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.78□□□□□ -0.36
RTN3-201ENST00000338850 RBM8AQ9Y5S9 174 aaKnown RBP12.78□□□□□ -0.36
RTN3-201ENST00000338850 SCN4AP35499 1836 aa12.77□□□□□ -0.37
RTN3-201ENST00000338850 HCLS1P14317 486 aaPredicted RBP12.77□□□□□ -0.37
RTN3-201ENST00000338850 PTH1RQ03431 593 aa12.77□□□□□ -0.37
RTN3-201ENST00000338850 GPC2Q8N158 579 aa12.77□□□□□ -0.37
RTN3-201ENST00000338850 RGS22Q8NE09 1264 aa12.77□□□□□ -0.37
RTN3-201ENST00000338850 JDP2Q8WYK2 163 aa12.77□□□□□ -0.37
RTN3-201ENST00000338850 CHMP4CQ96CF2 233 aa12.77□□□□□ -0.37
RTN3-201ENST00000338850 JAKMIP1Q96N16 626 aaKnown RBP12.77□□□□□ -0.37
RTN3-201ENST00000338850 HACL1Q9UJ83 578 aa12.77□□□□□ -0.37
RTN3-201ENST00000338850 ANKRD36CQ5JPF3 1778 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 SLC27A2O14975 620 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 GJB2P29033 226 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 EPHX2P34913 555 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 RFX5P48382 616 aaPredicted RBP12.76□□□□□ -0.37
RTN3-201ENST00000338850 ST3GAL1Q11201 340 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 NMIQ13287 307 aaPredicted RBP12.76□□□□□ -0.37
RTN3-201ENST00000338850 CWF19L2Q2TBE0 894 aaKnown RBP12.76□□□□□ -0.37
RTN3-201ENST00000338850 LARGE2Q8N3Y3 721 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 MAP7D2Q96T17 732 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 USP25Q9UHP3 1055 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 TRMT112Q9UI30 125 aaKnown RBP12.76□□□□□ -0.37
RTN3-201ENST00000338850 ATP6V0A2Q9Y487 856 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 SH3TC1Q8TE82 1336 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 MYH7P12883 1935 aa12.76□□□□□ -0.37
RTN3-201ENST00000338850 RPS6KB1P23443 525 aa12.75□□□□□ -0.37
RTN3-201ENST00000338850 EIF6P56537 245 aaKnown RBP12.75□□□□□ -0.37
RTN3-201ENST00000338850 KRT85P78386 507 aa12.75□□□□□ -0.37
RTN3-201ENST00000338850 EAPPQ56P03 285 aaPredicted RBP12.75□□□□□ -0.37
RTN3-201ENST00000338850 BLOC1S2Q6QNY1 142 aa12.75□□□□□ -0.37
RTN3-201ENST00000338850 RIC3Q7Z5B4 369 aa12.75□□□□□ -0.37
RTN3-201ENST00000338850 PLBD2Q8NHP8 589 aa12.75□□□□□ -0.37
RTN3-201ENST00000338850 PPIL4Q8WUA2 492 aaKnown RBP eCLIP12.75□□□□□ -0.37
RTN3-201ENST00000338850 PASKQ96RG2 1323 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 19.7 ms