RNA–Protein interactions for RNA: ENST00000334389.5

LINC00643-201, long intergenic non-protein coding RNA 643, humanhuman

TSL 2 BASIC

Gene LINC00643, Length 3,247 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-201ENST00000334389 PDCD11Q14690 1871 aaKnown RBP2.31□□□□□ -2.04
LINC00643-201ENST00000334389 H0YIN7 160 aa2.31□□□□□ -2.04
LINC00643-201ENST00000334389 COL9A1P20849 921 aa2.31□□□□□ -2.04
LINC00643-201ENST00000334389 COPB2P35606 906 aa2.31□□□□□ -2.04
LINC00643-201ENST00000334389 MRPS5P82675 430 aaKnown RBP2.31□□□□□ -2.04
LINC00643-201ENST00000334389 NAALADL2Q58DX5 795 aa2.31□□□□□ -2.04
LINC00643-201ENST00000334389 P3H3Q8IVL6 736 aa2.31□□□□□ -2.04
LINC00643-201ENST00000334389 GPR65Q8IYL9 337 aa2.31□□□□□ -2.04
LINC00643-201ENST00000334389 NFATC2IPQ8NCF5 419 aa2.31□□□□□ -2.04
LINC00643-201ENST00000334389 DDX1Q92499 740 aaKnown RBP2.31□□□□□ -2.04
LINC00643-201ENST00000334389 TERF2IPQ9NYB0 399 aa2.31□□□□□ -2.04
LINC00643-201ENST00000334389 TFCP2L1Q9NZI6 479 aa2.31□□□□□ -2.04
LINC00643-201ENST00000334389 PRR5-ARHGAP8B1AHC4 643 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 TLL1O43897 1013 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 RIPPLY3P57055 190 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ARHGAP8P85298 464 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 RAB30Q15771 203 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ZNF326Q5BKZ1 582 aaKnown RBP2.3□□□□□ -2.04
LINC00643-201ENST00000334389 OLFML2BQ68BL8 750 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 TICAM2Q86XR7 235 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 KRTAP4-9Q9BYQ8 210 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 STK39Q9UEW8 545 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ZNRF3Q9ULT6 936 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ATP6V0A2Q9Y487 856 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 TAF4O00268 1085 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 PLEKHG5O94827 1062 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ALADP13716 330 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 OTOP1Q7RTM1 612 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ABRAQ8N0Z2 381 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 SLC43A3Q8NBI5 491 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ZNF652Q9Y2D9 606 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 GREB1Q4ZG55 1949 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 LAMA4Q16363 1823 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 SPDYE4A6NLX3 237 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 MKRN3Q13064 507 aaKnown RBP2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ACAP1Q15027 740 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 SF3B3Q15393 1217 aaKnown RBP2.3□□□□□ -2.04
LINC00643-201ENST00000334389 NBPF1Q3BBV0 1214 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 NBPF20Q3BBV1 942 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 SH3D19Q5HYK7 790 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 LCE1DQ5T752 114 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 PDXDC2PQ6P474 469 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 METTL16Q86W50 562 aaKnown RBP2.3□□□□□ -2.04
LINC00643-201ENST00000334389 IFNL1Q8IU54 200 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ZNF513Q8N8E2 541 aaPredicted RBP2.3□□□□□ -2.04
LINC00643-201ENST00000334389 C2orf69Q8N8R5 385 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 PNISRQ8TF01 805 aaKnown RBP2.3□□□□□ -2.04
LINC00643-201ENST00000334389 PLA2G12BQ9BX93 195 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 CCDC8Q9H0W5 538 aaPredicted RBP2.3□□□□□ -2.04
LINC00643-201ENST00000334389 UPF3AQ9H1J1 476 aaKnown RBP2.3□□□□□ -2.04
LINC00643-201ENST00000334389 ZNF777Q9ULD5 760 aaPredicted RBP2.3□□□□□ -2.04
LINC00643-201ENST00000334389 AXIN2Q9Y2T1 843 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 PCSK5Q92824 1860 aa2.3□□□□□ -2.04
LINC00643-201ENST00000334389 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 CAND2O75155 1236 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 CAMTA2O94983 1202 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 ATF7P17544 494 aaPredicted RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 ST5P78524 1137 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 PPIL2Q13356 520 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 SPRYD7Q5W111 196 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 THSD4Q6ZMP0 1018 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 MFSD14AQ96MC6 490 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 CSRNP1Q96S65 589 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 DLL3Q9NYJ7 618 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 TBC1D12O60347 775 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 RPLP2P05387 115 aaKnown RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 MMP10P09238 476 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 LMOD1P29536 600 aaPredicted RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 HOXA6P31267 233 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 MAP3K12Q12852 859 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 ITPK1Q13572 414 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 C17orf99Q6UX52 265 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 TMEM184AQ6ZMB5 413 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 TOM1L2Q6ZVM7 507 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 RTL10Q7L3V2 364 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 LSRQ86X29 649 aaPredicted RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 TRIM47Q96LD4 638 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 RTKNQ9BST9 563 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 OSBPL6Q9BZF3 934 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 GBA2Q9HCG7 927 aaPredicted RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 FAM50BQ9Y247 325 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 DIS3Q9Y2L1 958 aaKnown RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 NUP210Q8TEM1 1887 aaPredicted RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 MAPK8IP3Q9UPT6 1336 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 LCTP09848 1927 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 DIAPH1O60610 1272 aaKnown RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 EFCAB14O75071 495 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 AKAP3O75969 853 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 EIF6P56537 245 aaKnown RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 ANKRD33Q7Z3H0 272 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 FAM83AQ86UY5 434 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 MAGEB6Q8N7X4 407 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 ARHGEF1Q92888 912 aaKnown RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 ZBTB47Q9UFB7 747 aaPredicted RBP2.29□□□□□ -2.04
LINC00643-201ENST00000334389 PRR12Q9ULL5 1215 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 Q9Y3F1 56 aa2.29□□□□□ -2.04
LINC00643-201ENST00000334389 FCHSD2O94868 740 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 BCRP11274 1271 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 HHIPL2Q6UWX4 724 aa2.28□□□□□ -2.04
LINC00643-201ENST00000334389 ZNF467Q7Z7K2 595 aaPredicted RBP2.28□□□□□ -2.04
Retrieved 100 of 20,778 RNA–protein pairs in 118.6 ms