RNA–Protein interactions for RNA: ENST00000334258.9

SYNE3-201, Transcript of spectrin repeat containing nuclear envelope family member 3, humanhuman

APPRIS P2 TSL 1 (best) BASIC

Gene SYNE3, Length 3,275 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3-201ENST00000334258 PFKFB2O60825 505 aa15.91■□□□□ 0.14
SYNE3-201ENST00000334258 DDX58O95786 925 aaKnown RBP15.91■□□□□ 0.14
SYNE3-201ENST00000334258 OTUD7BQ6GQQ9 843 aa15.91■□□□□ 0.14
SYNE3-201ENST00000334258 TMX1Q9H3N1 280 aa15.91■□□□□ 0.14
SYNE3-201ENST00000334258 SNRKQ9NRH2 765 aa15.91■□□□□ 0.14
SYNE3-201ENST00000334258 SERPINC1P01008 464 aa15.9■□□□□ 0.14
SYNE3-201ENST00000334258 FAM193AP78312 1265 aa15.9■□□□□ 0.14
SYNE3-201ENST00000334258 DHX32Q7L7V1 743 aaKnown RBP15.9■□□□□ 0.14
SYNE3-201ENST00000334258 SMARCC2Q8TAQ2 1214 aa15.9■□□□□ 0.14
SYNE3-201ENST00000334258 MCMDC2Q4G0Z9 681 aa15.9■□□□□ 0.14
SYNE3-201ENST00000334258 FMR1NBQ8N0W7 255 aaPredicted RBP15.9■□□□□ 0.14
SYNE3-201ENST00000334258 FAM208AQ9UK61 1670 aaKnown RBP15.9■□□□□ 0.14
SYNE3-201ENST00000334258 PIP4K2BP78356 416 aa15.9■□□□□ 0.14
SYNE3-201ENST00000334258 USPL1Q5W0Q7 1092 aa15.9■□□□□ 0.14
SYNE3-201ENST00000334258 KAZALD1Q96I82 304 aa15.9■□□□□ 0.14
SYNE3-201ENST00000334258 UTP14AQ9BVJ6 771 aaKnown RBP15.9■□□□□ 0.14
SYNE3-201ENST00000334258 LTN1O94822 1766 aa15.9■□□□□ 0.14
SYNE3-201ENST00000334258 STRCP1A6NGW2 1772 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 CCP110O43303 1012 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 CFAP100Q494V2 611 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 EPC1Q9H2F5 836 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 ZCCHC17Q9NP64 241 aaKnown RBP15.89■□□□□ 0.13
SYNE3-201ENST00000334258 ORC3Q9UBD5 711 aaPredicted RBP15.89■□□□□ 0.13
SYNE3-201ENST00000334258 CTDNEP1O95476 244 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 CAPN2P17655 700 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 TNNT3P45378 269 aaPredicted RBP15.89■□□□□ 0.13
SYNE3-201ENST00000334258 EVA1CP58658 441 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 GPS2Q13227 327 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 CCDC93Q567U6 631 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 AKAP4Q5JQC9 854 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 CCDC34Q96HJ3 373 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 KCND1Q9NSA2 647 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 ZKSCAN7Q9P0L1 754 aaPredicted RBP15.89■□□□□ 0.13
SYNE3-201ENST00000334258 RGPD1P0DJD0 1748 aa15.89■□□□□ 0.13
SYNE3-201ENST00000334258 HMGB1P09429 215 aaKnown RBP15.88■□□□□ 0.13
SYNE3-201ENST00000334258 FANCCQ00597 558 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 NEXNQ0ZGT2 675 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 NWD1Q149M9 1564 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 ATL3Q6DD88 541 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 ADALQ6DHV7 355 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 PTCD1O75127 700 aaKnown RBP15.88■□□□□ 0.13
SYNE3-201ENST00000334258 EVCP57679 992 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 PTPN21Q16825 1174 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 SYNE3Q6ZMZ3 975 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 TUBB4AP04350 444 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 ATP1A3P13637 1013 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 TATP17735 454 aaPredicted RBP15.88■□□□□ 0.13
SYNE3-201ENST00000334258 STOX1Q6ZVD7 989 aa15.88■□□□□ 0.13
SYNE3-201ENST00000334258 DBNLQ9UJU6 430 aaKnown RBP15.88■□□□□ 0.13
SYNE3-201ENST00000334258 UBASH3AP57075 661 aa15.87■□□□□ 0.13
SYNE3-201ENST00000334258 GOLGA8FQ08AF8 430 aa15.87■□□□□ 0.13
SYNE3-201ENST00000334258 GOLGA8DPQ0D2H9 430 aa15.87■□□□□ 0.13
SYNE3-201ENST00000334258 SPATA31A3Q5VYP0 1347 aa15.87■□□□□ 0.13
SYNE3-201ENST00000334258 ADAMTS2O95450 1211 aa15.87■□□□□ 0.13
SYNE3-201ENST00000334258 PRR29P0C7W0 189 aa15.87■□□□□ 0.13
SYNE3-201ENST00000334258 TFCP2Q12800 502 aa15.87■□□□□ 0.13
SYNE3-201ENST00000334258 DHX8Q14562 1220 aaKnown RBP15.87■□□□□ 0.13
SYNE3-201ENST00000334258 CLIC4Q9Y696 253 aa15.87■□□□□ 0.13
SYNE3-201ENST00000334258 NFAT5O94916 1531 aa15.87■□□□□ 0.13
SYNE3-201ENST00000334258 KRBA2Q6ZNG9 492 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 MARF1Q9Y4F3 1742 aaKnown RBP15.86■□□□□ 0.13
SYNE3-201ENST00000334258 CYP27B1O15528 508 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 ZNF202O95125 648 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 ATP5JP18859 108 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 PDILTQ8N807 584 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 SRRTQ9BXP5 876 aaKnown RBP15.86■□□□□ 0.13
SYNE3-201ENST00000334258 SPTLC2O15270 562 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 OAS2P29728 719 aaKnown RBP15.86■□□□□ 0.13
SYNE3-201ENST00000334258 TXLNBQ8N3L3 684 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 C8orf76Q96K31 380 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 NEUROD6Q96NK8 337 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 DBNDD2Q9BQY9 259 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 COL15A1P39059 1388 aa15.86■□□□□ 0.13
SYNE3-201ENST00000334258 NUTM2BA6NNL0 878 aaPredicted RBP15.85■□□□□ 0.13
SYNE3-201ENST00000334258 NUTM2EB1AL46 878 aaPredicted RBP15.85■□□□□ 0.13
SYNE3-201ENST00000334258 TPM1P09493 284 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 GNG11P61952 73 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 ST5P78524 1137 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 RAD51AP2Q09MP3 1159 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 LRRFIP1Q32MZ4 808 aaKnown RBP15.85■□□□□ 0.13
SYNE3-201ENST00000334258 RAB11FIP4Q86YS3 637 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 NUTM2AQ8IVF1 878 aaPredicted RBP15.85■□□□□ 0.13
SYNE3-201ENST00000334258 KCNG4Q8TDN1 519 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 CACNA1FO60840 1977 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 TOP1P11387 765 aaKnown RBP15.85■□□□□ 0.13
SYNE3-201ENST00000334258 NLRP12P59046 1061 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 HSP90AA4PQ58FG1 418 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 TNNI3KQ59H18 835 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 LINC00301Q8NCQ3 95 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 RTEL1Q9NZ71 1219 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 FPGT-TNNI3KV9GXZ4 949 aa15.85■□□□□ 0.13
SYNE3-201ENST00000334258 ZRANB2O95218 330 aaKnown RBP eCLIP15.85■□□□□ 0.13
SYNE3-201ENST00000334258 ILDR1Q86SU0 546 aaPredicted RBP15.85■□□□□ 0.13
SYNE3-201ENST00000334258 PHLPP2Q6ZVD8 1323 aa15.84■□□□□ 0.13
SYNE3-201ENST00000334258 EFCAB8A8MWE9 144 aa15.84■□□□□ 0.13
SYNE3-201ENST00000334258 ZSCAN12O43309 604 aa15.84■□□□□ 0.13
SYNE3-201ENST00000334258 TADA3O75528 432 aa15.84■□□□□ 0.13
SYNE3-201ENST00000334258 MARCKSP29966 332 aaPredicted RBP15.84■□□□□ 0.13
SYNE3-201ENST00000334258 PDIA3P30101 505 aaKnown RBP15.84■□□□□ 0.13
SYNE3-201ENST00000334258 SMC1AQ14683 1233 aaKnown RBP15.84■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms