RNA–Protein interactions for RNA: ENST00000333371.7

VPS33B-201, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33B, Length 2,767 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-201ENST00000333371 TMOD3Q9NYL9 352 aa14.42□□□□□ -0.1
VPS33B-201ENST00000333371 PRDM4Q9UKN5 801 aa14.42□□□□□ -0.1
VPS33B-201ENST00000333371 CARMIL3Q8ND23 1372 aa14.42□□□□□ -0.1
VPS33B-201ENST00000333371 NWD2Q9ULI1 1742 aa14.42□□□□□ -0.1
VPS33B-201ENST00000333371 UBR2Q8IWV8 1755 aa14.42□□□□□ -0.1
VPS33B-201ENST00000333371 PCDHA7Q9UN72 937 aa14.42□□□□□ -0.1
VPS33B-201ENST00000333371 TJP1Q07157 1748 aa14.42□□□□□ -0.1
VPS33B-201ENST00000333371 SHANK3Q9BYB0 1731 aa14.42□□□□□ -0.1
VPS33B-201ENST00000333371 FOXP2O15409 715 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 RNF113AO15541 343 aaKnown RBP14.41□□□□□ -0.1
VPS33B-201ENST00000333371 KINO60870 393 aaKnown RBP14.41□□□□□ -0.1
VPS33B-201ENST00000333371 HMGB1P09429 215 aaKnown RBP14.41□□□□□ -0.1
VPS33B-201ENST00000333371 SCARF1Q14162 830 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 STX1AQ16623 288 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 AOPEPQ8N6M6 819 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 AGXT2Q9BYV1 514 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 BECN2A8MW95 431 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 EYA2O00167 538 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 CTIFO43310 598 aaKnown RBP14.41□□□□□ -0.1
VPS33B-201ENST00000333371 NCBP1Q09161 790 aaKnown RBP14.41□□□□□ -0.1
VPS33B-201ENST00000333371 ARHGAP30Q7Z6I6 1101 aaPredicted RBP14.41□□□□□ -0.1
VPS33B-201ENST00000333371 LRRC8AQ8IWT6 810 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 TRMT1Q9NXH9 659 aaKnown RBP14.41□□□□□ -0.1
VPS33B-201ENST00000333371 DENND2AQ9ULE3 1009 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 CLIC4Q9Y696 253 aa14.41□□□□□ -0.1
VPS33B-201ENST00000333371 WASHC4Q2M389 1173 aa14.4□□□□□ -0.1
VPS33B-201ENST00000333371 ANKRD7Q92527 254 aa14.4□□□□□ -0.1
VPS33B-201ENST00000333371 IL15P40933 162 aaPredicted RBP14.4□□□□□ -0.1
VPS33B-201ENST00000333371 FAM160A1Q05DH4 1040 aa14.4□□□□□ -0.1
VPS33B-201ENST00000333371 NKX2-3Q8TAU0 364 aa14.4□□□□□ -0.1
VPS33B-201ENST00000333371 KCPQ6ZWJ8 1503 aa14.4□□□□□ -0.1
VPS33B-201ENST00000333371 NDUFA8P51970 172 aa14.39□□□□□ -0.11
VPS33B-201ENST00000333371 PAPPAQ13219 1627 aa14.39□□□□□ -0.11
VPS33B-201ENST00000333371 BIN1O00499 593 aa14.39□□□□□ -0.11
VPS33B-201ENST00000333371 ISM2Q6H9L7 571 aa14.39□□□□□ -0.11
VPS33B-201ENST00000333371 SMAP1Q8IYB5 467 aaPredicted RBP14.39□□□□□ -0.11
VPS33B-201ENST00000333371 SYNE4Q8N205 404 aa14.39□□□□□ -0.11
VPS33B-201ENST00000333371 ZNF396Q96N95 335 aaPredicted RBP14.39□□□□□ -0.11
VPS33B-201ENST00000333371 SDF4Q9BRK5 362 aa14.39□□□□□ -0.11
VPS33B-201ENST00000333371 NOL12Q9UGY1 213 aaKnown RBP eCLIP14.39□□□□□ -0.11
VPS33B-201ENST00000333371 ZHX1Q9UKY1 873 aaPredicted RBP14.39□□□□□ -0.11
VPS33B-201ENST00000333371 V9GYY5 206 aaPredicted RBP14.39□□□□□ -0.11
VPS33B-201ENST00000333371 NUP188Q5SRE5 1749 aa14.39□□□□□ -0.11
VPS33B-201ENST00000333371 CCDC69A6NI79 296 aa14.38□□□□□ -0.11
VPS33B-201ENST00000333371 SKILP12757 684 aa14.38□□□□□ -0.11
VPS33B-201ENST00000333371 DPCR1Q3MIW9 517 aa14.38□□□□□ -0.11
VPS33B-201ENST00000333371 FMR1NBQ8N0W7 255 aaPredicted RBP14.38□□□□□ -0.11
VPS33B-201ENST00000333371 SYTL4Q96C24 671 aaPredicted RBP14.38□□□□□ -0.11
VPS33B-201ENST00000333371 PUS7LQ9H0K6 701 aaKnown RBP14.38□□□□□ -0.11
VPS33B-201ENST00000333371 MYO5AQ9Y4I1 1855 aaKnown RBP14.38□□□□□ -0.11
VPS33B-201ENST00000333371 KLF18A0A0U1RQI7 1052 aa14.38□□□□□ -0.11
VPS33B-201ENST00000333371 IGSF3O75054 1194 aa14.38□□□□□ -0.11
VPS33B-201ENST00000333371 FGAP02671 866 aa14.38□□□□□ -0.11
VPS33B-201ENST00000333371 ZSCAN20P17040 1043 aaPredicted RBP14.38□□□□□ -0.11
VPS33B-201ENST00000333371 GORABQ5T7V8 394 aa14.38□□□□□ -0.11
VPS33B-201ENST00000333371 SARM1Q6SZW1 724 aa14.38□□□□□ -0.11
VPS33B-201ENST00000333371 ZNF274Q96GC6 653 aaPredicted RBP14.38□□□□□ -0.11
VPS33B-201ENST00000333371 SMTNL1A8MU46 457 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 KIF28PB7ZC32 967 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 MRPS27Q92552 414 aaKnown RBP14.37□□□□□ -0.11
VPS33B-201ENST00000333371 XAGE2Q96GT9 111 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 MRFAP1L1Q96HT8 127 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 AIFM3Q96NN9 605 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 TOGARAM1Q9Y4F4 1720 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 CTAGE5O15320 804 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 PRC1O43663 620 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 RXRAP19793 462 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 CDC25BP30305 580 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 ZAP70P43403 619 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 ANO10Q9NW15 660 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 CEP126Q9P2H0 1117 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 HPS5Q9UPZ3 1129 aa14.37□□□□□ -0.11
VPS33B-201ENST00000333371 TNS2Q63HR2 1409 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 GOLGA8BA8MQT2 603 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 ANTXR2P58335 489 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 CCZ1BP86790 482 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 CCZ1P86791 482 aaPredicted RBP14.36□□□□□ -0.11
VPS33B-201ENST00000333371 STK38Q15208 465 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 SF3A1Q15459 793 aaKnown RBP14.36□□□□□ -0.11
VPS33B-201ENST00000333371 TTC39AQ5SRH9 613 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 CEP135Q66GS9 1140 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 NBPF11Q86T75 865 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 FAM89AQ96GI7 184 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 C8orf76Q96K31 380 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 LINC00301Q8NCQ3 95 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 CCDC112Q8NEF3 446 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 GPR108Q9NPR9 543 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 ORC3Q9UBD5 711 aaPredicted RBP14.36□□□□□ -0.11
VPS33B-201ENST00000333371 NEDD4P46934 1319 aa14.36□□□□□ -0.11
VPS33B-201ENST00000333371 CEP57L1Q8IYX8 460 aa14.35□□□□□ -0.11
VPS33B-201ENST00000333371 COL14A1Q05707 1796 aaKnown RBP14.35□□□□□ -0.11
VPS33B-201ENST00000333371 ROBO1Q9Y6N7 1651 aa14.35□□□□□ -0.11
VPS33B-201ENST00000333371 CAVIN2O95810 425 aa14.35□□□□□ -0.11
VPS33B-201ENST00000333371 PIGBQ92521 554 aa14.35□□□□□ -0.11
VPS33B-201ENST00000333371 RTEL1Q9NZ71 1219 aa14.35□□□□□ -0.11
VPS33B-201ENST00000333371 ASAP1Q9ULH1 1129 aa14.35□□□□□ -0.11
VPS33B-201ENST00000333371 MARCKSP29966 332 aaPredicted RBP14.34□□□□□ -0.11
VPS33B-201ENST00000333371 PTPN21Q16825 1174 aa14.34□□□□□ -0.11
VPS33B-201ENST00000333371 CCDC57Q2TAC2 916 aa14.34□□□□□ -0.11
VPS33B-201ENST00000333371 ADALQ6DHV7 355 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms