RNA–Protein interactions for RNA: ENST00000318007.9

PDLIM5-202, Transcript of PDZ and LIM domain 5, humanhuman

TSL 1 (best) BASIC

Gene PDLIM5, Length 1,960 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM5-202ENST00000318007 SOGA3Q5TF21 947 aa18.72■□□□□ 0.59
PDLIM5-202ENST00000318007 MXD3Q9BW11 206 aa18.72■□□□□ 0.59
PDLIM5-202ENST00000318007 ECE2O60344 883 aa18.71■□□□□ 0.59
PDLIM5-202ENST00000318007 IDH1O75874 414 aaKnown RBP18.71■□□□□ 0.59
PDLIM5-202ENST00000318007 GPR162Q16538 588 aa18.71■□□□□ 0.59
PDLIM5-202ENST00000318007 RTFDC1Q9BY42 306 aaPredicted RBP18.71■□□□□ 0.59
PDLIM5-202ENST00000318007 COL4A5P29400 1685 aa18.7■□□□□ 0.58
PDLIM5-202ENST00000318007 AKAP11Q9UKA4 1901 aa18.7■□□□□ 0.58
PDLIM5-202ENST00000318007 MYH13Q9UKX3 1938 aa18.7■□□□□ 0.58
PDLIM5-202ENST00000318007 GTF2IP78347 998 aa18.7■□□□□ 0.58
PDLIM5-202ENST00000318007 PSMD1Q99460 953 aa18.7■□□□□ 0.58
PDLIM5-202ENST00000318007 PIH1D3Q9NQM4 214 aaKnown RBP18.7■□□□□ 0.58
PDLIM5-202ENST00000318007 KIAA2012Q0VF49 1180 aa18.7■□□□□ 0.58
PDLIM5-202ENST00000318007 AK9Q5TCS8 1911 aa18.69■□□□□ 0.58
PDLIM5-202ENST00000318007 PRELPP51888 382 aa18.69■□□□□ 0.58
PDLIM5-202ENST00000318007 SUPT20HQ8NEM7 779 aa18.69■□□□□ 0.58
PDLIM5-202ENST00000318007 FER1L6Q2WGJ9 1857 aa18.69■□□□□ 0.58
PDLIM5-202ENST00000318007 MYO5AQ9Y4I1 1855 aaKnown RBP18.69■□□□□ 0.58
PDLIM5-202ENST00000318007 IARSP41252 1262 aaKnown RBP18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 TDRD7Q8NHU6 1098 aaKnown RBP18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 EVI5LQ96CN4 794 aa18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 COA1Q9GZY4 146 aa18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 DENND2AQ9ULE3 1009 aa18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 CHD4Q14839 1912 aa18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 ARFGEF1Q9Y6D6 1849 aa18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 F8W031 263 aaPredicted RBP18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 PRDX5P30044 214 aa18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 C15orf52Q6ZUT6 534 aaKnown RBP18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 LRP2BPQ9P2M1 347 aa18.68■□□□□ 0.58
PDLIM5-202ENST00000318007 RAD17O75943 681 aa18.67■□□□□ 0.58
PDLIM5-202ENST00000318007 GRIK5Q16478 980 aa18.67■□□□□ 0.58
PDLIM5-202ENST00000318007 CWC27Q6UX04 472 aaKnown RBP18.67■□□□□ 0.58
PDLIM5-202ENST00000318007 ZNF512BQ96KM6 892 aaPredicted RBP18.67■□□□□ 0.58
PDLIM5-202ENST00000318007 YDJCA8MPS7 323 aa18.66■□□□□ 0.58
PDLIM5-202ENST00000318007 IL1R1P14778 569 aa18.66■□□□□ 0.58
PDLIM5-202ENST00000318007 PPIL4Q8WUA2 492 aaKnown RBP eCLIP18.66■□□□□ 0.58
PDLIM5-202ENST00000318007 RAI14Q9P0K7 980 aa18.66■□□□□ 0.58
PDLIM5-202ENST00000318007 C8orf34Q49A92 452 aa18.66■□□□□ 0.58
PDLIM5-202ENST00000318007 MFSD14BQ5SR56 506 aa18.66■□□□□ 0.58
PDLIM5-202ENST00000318007 TTLL5Q6EMB2 1281 aa18.66■□□□□ 0.58
PDLIM5-202ENST00000318007 KBTBD3Q8NAB2 608 aa18.66■□□□□ 0.58
PDLIM5-202ENST00000318007 NIM1KQ8IY84 436 aa18.65■□□□□ 0.58
PDLIM5-202ENST00000318007 FAM227BQ96M60 508 aa18.65■□□□□ 0.58
PDLIM5-202ENST00000318007 SCN9AQ15858 1988 aa18.65■□□□□ 0.58
PDLIM5-202ENST00000318007 CDC45O75419 566 aa18.64■□□□□ 0.58
PDLIM5-202ENST00000318007 GRIPAP1Q4V328 841 aa18.64■□□□□ 0.58
PDLIM5-202ENST00000318007 SLC9C2Q5TAH2 1124 aa18.64■□□□□ 0.58
PDLIM5-202ENST00000318007 JDP2Q8WYK2 163 aa18.64■□□□□ 0.58
PDLIM5-202ENST00000318007 SEC62Q99442 399 aaKnown RBP18.64■□□□□ 0.58
PDLIM5-202ENST00000318007 IL25Q9H293 177 aa18.64■□□□□ 0.58
PDLIM5-202ENST00000318007 DIAPH3Q9NSV4 1193 aa18.64■□□□□ 0.58
PDLIM5-202ENST00000318007 MAGEB6Q8N7X4 407 aa18.64■□□□□ 0.57
PDLIM5-202ENST00000318007 PODNQ7Z5L7 613 aa18.63■□□□□ 0.57
PDLIM5-202ENST00000318007 CCDC88AQ3V6T2 1871 aa18.63■□□□□ 0.57
PDLIM5-202ENST00000318007 A0A0D9SFI3 127 aa18.62■□□□□ 0.57
PDLIM5-202ENST00000318007 SEMA3EO15041 775 aa18.62■□□□□ 0.57
PDLIM5-202ENST00000318007 SEC24BO95487 1268 aa18.62■□□□□ 0.57
PDLIM5-202ENST00000318007 CHMLP26374 656 aa18.62■□□□□ 0.57
PDLIM5-202ENST00000318007 NMIQ13287 307 aaPredicted RBP18.62■□□□□ 0.57
PDLIM5-202ENST00000318007 TTF1Q15361 905 aaPredicted RBP18.62■□□□□ 0.57
PDLIM5-202ENST00000318007 ZBTB12Q9Y330 459 aaPredicted RBP18.62■□□□□ 0.57
PDLIM5-202ENST00000318007 CCDC129Q6ZRS4 1044 aa18.62■□□□□ 0.57
PDLIM5-202ENST00000318007 CERS5Q8N5B7 392 aa18.62■□□□□ 0.57
PDLIM5-202ENST00000318007 MFAP1P55081 439 aaKnown RBP18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 DIXDC1Q155Q3 683 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 DZIP1Q86YF9 867 aaKnown RBP18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 KIAA0825Q8IV33 1275 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 MIGA1Q8NAN2 632 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 WDR66Q8TBY9 1149 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 PSMD14O00487 310 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 SCNN1DP51172 638 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 MECOMQ03112 1051 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 MAP3K12Q12852 859 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 ERICH6Q7L0X2 663 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 RNF181Q9P0P0 153 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 ZNF532Q9HCE3 1301 aa18.61■□□□□ 0.57
PDLIM5-202ENST00000318007 USP17L3A6NCW0 530 aa18.6■□□□□ 0.57
PDLIM5-202ENST00000318007 USP17L4A6NCW7 530 aa18.6■□□□□ 0.57
PDLIM5-202ENST00000318007 LDHBP07195 334 aaKnown RBP18.6■□□□□ 0.57
PDLIM5-202ENST00000318007 PDE6AP16499 860 aa18.6■□□□□ 0.57
PDLIM5-202ENST00000318007 CASC1Q6TDU7 716 aa18.6■□□□□ 0.57
PDLIM5-202ENST00000318007 USP17L1Q7RTZ2 530 aa18.6■□□□□ 0.57
PDLIM5-202ENST00000318007 ADGRA1Q86SQ6 560 aa18.6■□□□□ 0.57
PDLIM5-202ENST00000318007 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.6■□□□□ 0.57
PDLIM5-202ENST00000318007 ZNRF3Q9ULT6 936 aa18.6■□□□□ 0.57
PDLIM5-202ENST00000318007 LMNB1P20700 586 aa18.59■□□□□ 0.57
PDLIM5-202ENST00000318007 ZNF384Q8TF68 577 aa18.59■□□□□ 0.57
PDLIM5-202ENST00000318007 GJA3Q9Y6H8 435 aa18.59■□□□□ 0.57
PDLIM5-202ENST00000318007 RNF113AO15541 343 aaKnown RBP18.59■□□□□ 0.57
PDLIM5-202ENST00000318007 ZNF589Q86UQ0 364 aaPredicted RBP18.59■□□□□ 0.57
PDLIM5-202ENST00000318007 PUS7LQ9H0K6 701 aaKnown RBP18.59■□□□□ 0.57
PDLIM5-202ENST00000318007 LTBP3Q9NS15 1303 aa18.58■□□□□ 0.56
PDLIM5-202ENST00000318007 M0R2C6 588 aa18.58■□□□□ 0.56
PDLIM5-202ENST00000318007 CYP7A1P22680 504 aa18.58■□□□□ 0.56
PDLIM5-202ENST00000318007 ADD2P35612 726 aa18.58■□□□□ 0.56
PDLIM5-202ENST00000318007 CXCL9Q07325 125 aa18.58■□□□□ 0.56
PDLIM5-202ENST00000318007 DACT2Q5SW24 774 aa18.58■□□□□ 0.56
PDLIM5-202ENST00000318007 OSBP2Q969R2 916 aa18.58■□□□□ 0.56
PDLIM5-202ENST00000318007 STRIP1Q5VSL9 837 aa18.57■□□□□ 0.56
PDLIM5-202ENST00000318007 NAA16Q6N069 864 aaPredicted RBP18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 12.5 ms