RNA–Protein interactions for RNA: ENST00000315544.6

CNOT4-201, Transcript of CCR4-NOT transcription complex subunit 4, humanhuman

TSL 1 (best) BASIC

Gene CNOT4, Length 3,783 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CNOT4-201ENST00000315544 MPRIPQ6WCQ1 1025 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 EDC3Q96F86 508 aaKnown RBP9.41□□□□□ -0.9
CNOT4-201ENST00000315544 MAST3O60307 1309 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 BTBD11A6QL63 1104 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 M0R2N6 131 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 SRGAP3O43295 1099 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 HMMRO75330 724 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 SCARF1Q14162 830 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 KLHDC4Q8TBB5 520 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 UBN2Q6ZU65 1347 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 WDR33Q9C0J8 1336 aaKnown RBP9.41□□□□□ -0.9
CNOT4-201ENST00000315544 TPM2P07951 284 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 PBX1P40424 430 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 AMPHP49418 695 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 CCDC183Q5T5S1 534 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 NFATC2IPQ8NCF5 419 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 L2HGDHQ9H9P8 463 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 SH2B1Q9NRF2 756 aaPredicted RBP9.41□□□□□ -0.9
CNOT4-201ENST00000315544 ZNF446Q9NWS9 450 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 TUBE1Q9UJT0 475 aa9.41□□□□□ -0.9
CNOT4-201ENST00000315544 M0R2C6 588 aa9.4□□□□□ -0.9
CNOT4-201ENST00000315544 IFIT2P09913 472 aaKnown RBP9.4□□□□□ -0.9
CNOT4-201ENST00000315544 UBTFL1P0CB47 393 aaPredicted RBP9.4□□□□□ -0.9
CNOT4-201ENST00000315544 DNM1Q05193 864 aaKnown RBP9.4□□□□□ -0.9
CNOT4-201ENST00000315544 COL23A1Q86Y22 540 aaPredicted RBP9.4□□□□□ -0.9
CNOT4-201ENST00000315544 FLAD1Q8NFF5 587 aa9.4□□□□□ -0.9
CNOT4-201ENST00000315544 LEO1Q8WVC0 666 aaPredicted RBP9.4□□□□□ -0.9
CNOT4-201ENST00000315544 DENND2AQ9ULE3 1009 aa9.4□□□□□ -0.9
CNOT4-201ENST00000315544 PLBD2Q8NHP8 589 aa9.4□□□□□ -0.9
CNOT4-201ENST00000315544 GZF1Q9H116 711 aaPredicted RBP9.4□□□□□ -0.9
CNOT4-201ENST00000315544 CLSTN2Q9H4D0 955 aa9.4□□□□□ -0.9
CNOT4-201ENST00000315544 CAMTA2O94983 1202 aa9.4□□□□□ -0.91
CNOT4-201ENST00000315544 ARID4AP29374 1257 aaPredicted RBP9.4□□□□□ -0.91
CNOT4-201ENST00000315544 CRY2Q49AN0 593 aa9.4□□□□□ -0.91
CNOT4-201ENST00000315544 FOXP4Q8IVH2 680 aaPredicted RBP9.4□□□□□ -0.91
CNOT4-201ENST00000315544 SEC62Q99442 399 aaKnown RBP9.4□□□□□ -0.91
CNOT4-201ENST00000315544 LLPHQ9BRT6 129 aaKnown RBP9.4□□□□□ -0.91
CNOT4-201ENST00000315544 STRN4Q9NRL3 753 aa9.4□□□□□ -0.91
CNOT4-201ENST00000315544 LOC102724428A0A0B4J2F2 783 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 ST18O60284 1047 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 GJB2P29033 226 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 SIK1P57059 783 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 OSBPL5Q9H0X9 879 aaPredicted RBP9.39□□□□□ -0.91
CNOT4-201ENST00000315544 FBXO3Q9UK99 471 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 KIF28PB7ZC32 967 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 POLRMTO00411 1230 aaKnown RBP9.39□□□□□ -0.91
CNOT4-201ENST00000315544 EDIL3O43854 480 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 NR1I2O75469 434 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 TRIM65Q6PJ69 517 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 C7orf43Q8WVR3 580 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 SEC31BQ9NQW1 1179 aa9.39□□□□□ -0.91
CNOT4-201ENST00000315544 NAA16Q6N069 864 aaPredicted RBP9.38□□□□□ -0.91
CNOT4-201ENST00000315544 GDPD2Q9HCC8 539 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 ZBTB4Q9P1Z0 1013 aaPredicted RBP9.38□□□□□ -0.91
CNOT4-201ENST00000315544 CD2APQ9Y5K6 639 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 PTPRFP10586 1907 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 GYS1P13807 737 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 EVA1CP58658 441 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 KBTBD3Q8NAB2 608 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 FAM184AQ8NB25 1140 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 PDCL3Q9H2J4 239 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 HMG20BQ9P0W2 317 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 ASAP1Q9ULH1 1129 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 ZC3H4Q9UPT8 1303 aaKnown RBP9.38□□□□□ -0.91
CNOT4-201ENST00000315544 IL6STP40189 918 aaPredicted RBP9.38□□□□□ -0.91
CNOT4-201ENST00000315544 ATP2B3Q16720 1220 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 OSBP2Q969R2 916 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 FOXD4L1Q9NU39 408 aa9.38□□□□□ -0.91
CNOT4-201ENST00000315544 ERVV-1B6SEH8 477 aa9.37□□□□□ -0.91
CNOT4-201ENST00000315544 U2AF2P26368 475 aaKnown RBP eCLIP9.37□□□□□ -0.915e-7■■■■■ 54.6
CNOT4-201ENST00000315544 SLC10A5Q5PT55 438 aa9.37□□□□□ -0.91
CNOT4-201ENST00000315544 MKRN1Q9UHC7 482 aaKnown RBP9.37□□□□□ -0.91
CNOT4-201ENST00000315544 JAK2O60674 1132 aa9.37□□□□□ -0.91
CNOT4-201ENST00000315544 ZNF18P17022 549 aa9.37□□□□□ -0.91
CNOT4-201ENST00000315544 LMOD2Q6P5Q4 547 aa9.37□□□□□ -0.91
CNOT4-201ENST00000315544 C11orf57Q6ZUT1 292 aaPredicted RBP9.37□□□□□ -0.91
CNOT4-201ENST00000315544 IGDCC4Q8TDY8 1250 aa9.37□□□□□ -0.91
CNOT4-201ENST00000315544 ZNF274Q96GC6 653 aaPredicted RBP9.37□□□□□ -0.91
CNOT4-201ENST00000315544 PDGFDQ9GZP0 370 aaPredicted RBP9.37□□□□□ -0.91
CNOT4-201ENST00000315544 DYNC1I1O14576 645 aa9.37□□□□□ -0.91
CNOT4-201ENST00000315544 PDIA3P30101 505 aaKnown RBP9.37□□□□□ -0.91
CNOT4-201ENST00000315544 SH3RF1Q7Z6J0 888 aa9.37□□□□□ -0.91
CNOT4-201ENST00000315544 HSPD1P10809 573 aaKnown RBP9.36□□□□□ -0.91
CNOT4-201ENST00000315544 TFCP2Q12800 502 aa9.36□□□□□ -0.91
CNOT4-201ENST00000315544 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.36□□□□□ -0.91
CNOT4-201ENST00000315544 DDX49Q9Y6V7 483 aaKnown RBP9.36□□□□□ -0.91
CNOT4-201ENST00000315544 RANBP6O60518 1105 aaKnown RBP9.36□□□□□ -0.91
CNOT4-201ENST00000315544 DTNBO60941 627 aa9.36□□□□□ -0.91
CNOT4-201ENST00000315544 PDIA4P13667 645 aaKnown RBP9.36□□□□□ -0.91
CNOT4-201ENST00000315544 TOB1P50616 345 aaPredicted RBP9.36□□□□□ -0.91
CNOT4-201ENST00000315544 NCBP1Q09161 790 aaKnown RBP9.36□□□□□ -0.91
CNOT4-201ENST00000315544 HELLSQ9NRZ9 838 aa9.36□□□□□ -0.91
CNOT4-201ENST00000315544 CLEC4GQ6UXB4 293 aa9.36□□□□□ -0.91
CNOT4-201ENST00000315544 KIAA1211Q6ZU35 1233 aa9.36□□□□□ -0.91
CNOT4-201ENST00000315544 ZNF34Q8IZ26 560 aa9.36□□□□□ -0.91
CNOT4-201ENST00000315544 ZSCAN31Q96LW9 406 aaPredicted RBP9.36□□□□□ -0.91
CNOT4-201ENST00000315544 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.36□□□□□ -0.91
CNOT4-201ENST00000315544 NARFQ9UHQ1 456 aa9.36□□□□□ -0.91
CNOT4-201ENST00000315544 ADAMTS3O15072 1205 aa9.35□□□□□ -0.91
CNOT4-201ENST00000315544 MAP4K4O95819 1239 aaPredicted RBP9.35□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms