RNA–Protein interactions for RNA: ENST00000311943.11

SCFD1-201, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 2,016 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-201ENST00000311943 IL15P40933 162 aaPredicted RBP14.96□□□□□ -0.01
SCFD1-201ENST00000311943 STRIP1Q5VSL9 837 aa14.96□□□□□ -0.01
SCFD1-201ENST00000311943 PRAMEF18Q5VWM3 479 aa14.96□□□□□ -0.01
SCFD1-201ENST00000311943 ZNF804AQ7Z570 1209 aa14.96□□□□□ -0.01
SCFD1-201ENST00000311943 CNTROBQ8N137 903 aa14.96□□□□□ -0.01
SCFD1-201ENST00000311943 SMC1BQ8NDV3 1235 aa14.96□□□□□ -0.01
SCFD1-201ENST00000311943 PDE3AQ14432 1141 aa14.95□□□□□ -0.02
SCFD1-201ENST00000311943 LDHDQ86WU2 507 aa14.95□□□□□ -0.02
SCFD1-201ENST00000311943 DDX19BQ9UMR2 479 aa14.95□□□□□ -0.02
SCFD1-201ENST00000311943 USP17L8P0C7I0 530 aa14.95□□□□□ -0.02
SCFD1-201ENST00000311943 LPIN2Q92539 896 aa14.95□□□□□ -0.02
SCFD1-201ENST00000311943 DPF2Q92785 391 aa14.95□□□□□ -0.02
SCFD1-201ENST00000311943 NEUROD6Q96NK8 337 aa14.95□□□□□ -0.02
SCFD1-201ENST00000311943 PCDHB15Q9Y5E8 787 aa14.95□□□□□ -0.02
SCFD1-201ENST00000311943 POLR2AP24928 1970 aaKnown RBP14.95□□□□□ -0.02
SCFD1-201ENST00000311943 ADM5C9JUS6 153 aa14.94□□□□□ -0.02
SCFD1-201ENST00000311943 H7C1D1 291 aa14.94□□□□□ -0.02
SCFD1-201ENST00000311943 HSPA6P17066 643 aa14.94□□□□□ -0.02
SCFD1-201ENST00000311943 SCARF1Q14162 830 aa14.94□□□□□ -0.02
SCFD1-201ENST00000311943 KIF4BQ2VIQ3 1234 aa14.94□□□□□ -0.02
SCFD1-201ENST00000311943 VPS37DQ86XT2 251 aa14.94□□□□□ -0.02
SCFD1-201ENST00000311943 XAGE2Q96GT9 111 aa14.94□□□□□ -0.02
SCFD1-201ENST00000311943 IL1RAPL2Q9NP60 686 aa14.94□□□□□ -0.02
SCFD1-201ENST00000311943 G3BP1Q13283 466 aaKnown RBP eCLIP14.93□□□□□ -0.02
SCFD1-201ENST00000311943 USP50Q70EL3 339 aaPredicted RBP14.93□□□□□ -0.02
SCFD1-201ENST00000311943 PNMA8AQ86V59 439 aaPredicted RBP14.93□□□□□ -0.02
SCFD1-201ENST00000311943 MYOZ2Q9NPC6 264 aa14.93□□□□□ -0.02
SCFD1-201ENST00000311943 NDUFB9Q9Y6M9 179 aa14.93□□□□□ -0.02
SCFD1-201ENST00000311943 IFIT1P09914 478 aaKnown RBP14.93□□□□□ -0.02
SCFD1-201ENST00000311943 SLC5A1P13866 664 aa14.93□□□□□ -0.02
SCFD1-201ENST00000311943 ZNF280AP59817 542 aaPredicted RBP14.93□□□□□ -0.02
SCFD1-201ENST00000311943 MFSD14BQ5SR56 506 aa14.93□□□□□ -0.02
SCFD1-201ENST00000311943 CCDC102BQ68D86 513 aa14.93□□□□□ -0.02
SCFD1-201ENST00000311943 AGBL3Q8NEM8 1001 aa14.93□□□□□ -0.02
SCFD1-201ENST00000311943 CCDC8Q9H0W5 538 aaPredicted RBP14.93□□□□□ -0.02
SCFD1-201ENST00000311943 GGA3Q9NZ52 723 aa14.93□□□□□ -0.02
SCFD1-201ENST00000311943 FRAT2O75474 233 aaPredicted RBP14.92□□□□□ -0.02
SCFD1-201ENST00000311943 OS9Q13438 667 aaPredicted RBP14.92□□□□□ -0.02
SCFD1-201ENST00000311943 CAVIN4Q5BKX8 364 aa14.92□□□□□ -0.02
SCFD1-201ENST00000311943 ANGEL2Q5VTE6 544 aaKnown RBP14.92□□□□□ -0.02
SCFD1-201ENST00000311943 USP48Q86UV5 1035 aa14.92□□□□□ -0.02
SCFD1-201ENST00000311943 DBNDD2Q9BQY9 259 aa14.92□□□□□ -0.02
SCFD1-201ENST00000311943 FZD1Q9UP38 647 aa14.92□□□□□ -0.02
SCFD1-201ENST00000311943 HDAC5Q9UQL6 1122 aa14.92□□□□□ -0.02
SCFD1-201ENST00000311943 PASKQ96RG2 1323 aa14.92□□□□□ -0.02
SCFD1-201ENST00000311943 WNT10BO00744 389 aa14.92□□□□□ -0.02
SCFD1-201ENST00000311943 RPS12P25398 132 aaKnown RBP14.92□□□□□ -0.02
SCFD1-201ENST00000311943 FSTL1Q12841 308 aa14.92□□□□□ -0.02
SCFD1-201ENST00000311943 EAF2Q96CJ1 260 aaPredicted RBP14.92□□□□□ -0.02
SCFD1-201ENST00000311943 ZNF408Q9H9D4 720 aa14.92□□□□□ -0.02
SCFD1-201ENST00000311943 SMARCA5O60264 1052 aaPredicted RBP14.91□□□□□ -0.02
SCFD1-201ENST00000311943 RASGRF1Q13972 1273 aa14.91□□□□□ -0.02
SCFD1-201ENST00000311943 CST9Q5W186 159 aa14.91□□□□□ -0.02
SCFD1-201ENST00000311943 TBC1D9Q6ZT07 1266 aa14.91□□□□□ -0.02
SCFD1-201ENST00000311943 GOLGA6L2Q8N9W4 650 aaPredicted RBP14.91□□□□□ -0.02
SCFD1-201ENST00000311943 PRMT6Q96LA8 375 aaPredicted RBP14.91□□□□□ -0.02
SCFD1-201ENST00000311943 ZNF609O15014 1411 aa14.91□□□□□ -0.02
SCFD1-201ENST00000311943 FAM205AQ6ZU69 1335 aa14.9□□□□□ -0.02
SCFD1-201ENST00000311943 CLRN2A0PK11 232 aa14.9□□□□□ -0.02
SCFD1-201ENST00000311943 MS4A1P11836 297 aa14.9□□□□□ -0.02
SCFD1-201ENST00000311943 PRDX5P30044 214 aa14.9□□□□□ -0.02
SCFD1-201ENST00000311943 TNNI3KQ59H18 835 aa14.9□□□□□ -0.02
SCFD1-201ENST00000311943 SNRKQ9NRH2 765 aa14.9□□□□□ -0.02
SCFD1-201ENST00000311943 FBXO3Q9UK99 471 aa14.9□□□□□ -0.02
SCFD1-201ENST00000311943 NOP58Q9Y2X3 529 aaKnown RBP14.9□□□□□ -0.02
SCFD1-201ENST00000311943 FPGT-TNNI3KV9GXZ4 949 aa14.9□□□□□ -0.02
SCFD1-201ENST00000311943 EXOC6Q8TAG9 804 aa14.9□□□□□ -0.02
SCFD1-201ENST00000311943 TTF2Q9UNY4 1162 aaKnown RBP14.9□□□□□ -0.02
SCFD1-201ENST00000311943 CDAN1Q8IWY9 1227 aa14.89□□□□□ -0.03
SCFD1-201ENST00000311943 PGAP2Q9UHJ9 254 aa14.89□□□□□ -0.03
SCFD1-201ENST00000311943 DBNLQ9UJU6 430 aaKnown RBP14.89□□□□□ -0.03
SCFD1-201ENST00000311943 APLP1P51693 650 aa14.88□□□□□ -0.03
SCFD1-201ENST00000311943 CACNB3P54284 484 aa14.88□□□□□ -0.03
SCFD1-201ENST00000311943 DIXDC1Q155Q3 683 aa14.88□□□□□ -0.03
SCFD1-201ENST00000311943 CFAP100Q494V2 611 aa14.88□□□□□ -0.03
SCFD1-201ENST00000311943 MOB2Q70IA6 237 aa14.88□□□□□ -0.03
SCFD1-201ENST00000311943 KRT26Q7Z3Y9 468 aa14.88□□□□□ -0.03
SCFD1-201ENST00000311943 MKRN1Q9UHC7 482 aaKnown RBP14.88□□□□□ -0.03
SCFD1-201ENST00000311943 ARAP2Q8WZ64 1704 aa14.87□□□□□ -0.03
SCFD1-201ENST00000311943 MCAMP43121 646 aa14.87□□□□□ -0.03
SCFD1-201ENST00000311943 RBM5P52756 815 aaKnown RBP eCLIP14.87□□□□□ -0.03
SCFD1-201ENST00000311943 RPAP2Q8IXW5 612 aaPredicted RBP14.87□□□□□ -0.03
SCFD1-201ENST00000311943 OGFOD1Q8N543 542 aa14.87□□□□□ -0.03
SCFD1-201ENST00000311943 DNAJC5GQ8N7S2 189 aa14.87□□□□□ -0.03
SCFD1-201ENST00000311943 RHPN1Q8TCX5 695 aa14.87□□□□□ -0.03
SCFD1-201ENST00000311943 ZNF384Q8TF68 577 aa14.87□□□□□ -0.03
SCFD1-201ENST00000311943 ZBED3Q96IU2 234 aaPredicted RBP14.87□□□□□ -0.03
SCFD1-201ENST00000311943 HMG20BQ9P0W2 317 aa14.87□□□□□ -0.03
SCFD1-201ENST00000311943 TDRD3Q9H7E2 651 aaKnown RBP14.87□□□□□ -0.03
SCFD1-201ENST00000311943 MYH13Q9UKX3 1938 aa14.85□□□□□ -0.03
SCFD1-201ENST00000311943 AACSQ86V21 672 aa14.85□□□□□ -0.03
SCFD1-201ENST00000311943 ABCF2Q9UG63 623 aa14.85□□□□□ -0.03
SCFD1-201ENST00000311943 CELF2O95319 508 aaKnown RBP14.85□□□□□ -0.03
SCFD1-201ENST00000311943 CRKP46108 304 aa14.85□□□□□ -0.03
SCFD1-201ENST00000311943 PRKG1Q13976 671 aa14.85□□□□□ -0.03
SCFD1-201ENST00000311943 DLGAP5Q15398 846 aa14.85□□□□□ -0.03
SCFD1-201ENST00000311943 DCPSQ96C86 337 aaKnown RBP14.85□□□□□ -0.03
SCFD1-201ENST00000311943 AKAP2Q9Y2D5 859 aa14.85□□□□□ -0.03
SCFD1-201ENST00000311943 MYO3BQ8WXR4 1341 aa14.84□□□□□ -0.03
SCFD1-201ENST00000311943 SPDYE2BA6NHP3 402 aa14.84□□□□□ -0.03
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms