RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 PRDM4Q9UKN5 801 aa17.01■□□□□ 0.31
PTPN9-201ENST00000306726 CCDC34Q96HJ3 373 aa17.01■□□□□ 0.31
PTPN9-201ENST00000306726 PTPDC1A2A3K4 754 aa17.01■□□□□ 0.31
PTPN9-201ENST00000306726 EIF4A1P60842 406 aaKnown RBP17.01■□□□□ 0.31
PTPN9-201ENST00000306726 LMBR1LQ6UX01 489 aa17.01■□□□□ 0.31
PTPN9-201ENST00000306726 CEP57L1Q8IYX8 460 aa17.01■□□□□ 0.31
PTPN9-201ENST00000306726 TMOD3Q9NYL9 352 aa17.01■□□□□ 0.31
PTPN9-201ENST00000306726 BBXQ8WY36 941 aaPredicted RBP17■□□□□ 0.31
PTPN9-201ENST00000306726 STAP2Q9UGK3 403 aa17■□□□□ 0.31
PTPN9-201ENST00000306726 SASH1O94885 1247 aa17■□□□□ 0.31
PTPN9-201ENST00000306726 ZSCAN20P17040 1043 aaPredicted RBP17■□□□□ 0.31
PTPN9-201ENST00000306726 RPS6KB1P23443 525 aa17■□□□□ 0.31
PTPN9-201ENST00000306726 RXRBP28702 533 aa17■□□□□ 0.31
PTPN9-201ENST00000306726 PPARDQ03181 441 aa17■□□□□ 0.31
PTPN9-201ENST00000306726 GPIHBP1Q8IV16 184 aa17■□□□□ 0.31
PTPN9-201ENST00000306726 EPHA10Q5JZY3 1008 aa16.99■□□□□ 0.31
PTPN9-201ENST00000306726 TEX35Q5T0J7 233 aa16.99■□□□□ 0.31
PTPN9-201ENST00000306726 NCBP1Q09161 790 aaKnown RBP16.99■□□□□ 0.31
PTPN9-201ENST00000306726 DDX19AQ9NUU7 478 aaKnown RBP16.99■□□□□ 0.31
PTPN9-201ENST00000306726 CFAP45Q9UL16 551 aa16.99■□□□□ 0.31
PTPN9-201ENST00000306726 RALYLQ86SE5 291 aaKnown RBP16.99■□□□□ 0.31
PTPN9-201ENST00000306726 ZSWIM6Q9HCJ5 1215 aa16.99■□□□□ 0.31
PTPN9-201ENST00000306726 SFPQP23246 707 aaKnown RBP eCLIP16.98■□□□□ 0.31
PTPN9-201ENST00000306726 ERC1Q8IUD2 1116 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 SMARCC1Q92922 1105 aaPredicted RBP16.98■□□□□ 0.31
PTPN9-201ENST00000306726 MYL10Q9BUA6 226 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 COBLO75128 1261 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 TNNT3P45378 269 aaPredicted RBP16.98■□□□□ 0.31
PTPN9-201ENST00000306726 ST3GAL1Q11201 340 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 SLC4A8Q2Y0W8 1093 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 KIF18AQ8NI77 898 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 SNW1Q13573 536 aaKnown RBP16.98■□□□□ 0.31
PTPN9-201ENST00000306726 ANKRD1Q15327 319 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 MICU3Q86XE3 530 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 SEPT12Q8IYM1 358 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 PAPPAQ13219 1627 aa16.98■□□□□ 0.31
PTPN9-201ENST00000306726 KSR2Q6VAB6 950 aa16.97■□□□□ 0.31
PTPN9-201ENST00000306726 HINFPQ9BQA5 517 aa16.97■□□□□ 0.31
PTPN9-201ENST00000306726 TERF1P54274 439 aa16.97■□□□□ 0.31
PTPN9-201ENST00000306726 GOLGA8BA8MQT2 603 aa16.96■□□□□ 0.31
PTPN9-201ENST00000306726 IDH1O75874 414 aaKnown RBP16.96■□□□□ 0.31
PTPN9-201ENST00000306726 TPM3P06753 285 aa16.96■□□□□ 0.31
PTPN9-201ENST00000306726 TEX13AQ9BXU3 409 aaPredicted RBP16.96■□□□□ 0.31
PTPN9-201ENST00000306726 TPM4P67936 248 aa16.96■□□□□ 0.31
PTPN9-201ENST00000306726 DMTNQ08495 405 aa16.96■□□□□ 0.31
PTPN9-201ENST00000306726 SCRN1Q12765 414 aa16.96■□□□□ 0.31
PTPN9-201ENST00000306726 C8orf76Q96K31 380 aa16.96■□□□□ 0.31
PTPN9-201ENST00000306726 AIFM3Q96NN9 605 aa16.96■□□□□ 0.31
PTPN9-201ENST00000306726 CLSTN2Q9H4D0 955 aa16.96■□□□□ 0.31
PTPN9-201ENST00000306726 KARSQ15046 597 aaKnown RBP16.96■□□□□ 0.3
PTPN9-201ENST00000306726 CYP21A2P08686 494 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 GPTP24298 496 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 ARHGAP29Q52LW3 1261 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 ORC3Q9UBD5 711 aaPredicted RBP16.95■□□□□ 0.3
PTPN9-201ENST00000306726 DOT1LQ8TEK3 1739 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 GYS2P54840 703 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 NECTIN1Q15223 517 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 PI16Q6UXB8 463 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 FAM196AQ6ZSG2 479 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 CMTR1Q8N1G2 835 aaKnown RBP16.95■□□□□ 0.3
PTPN9-201ENST00000306726 MARCH10Q8NA82 808 aaPredicted RBP16.95■□□□□ 0.3
PTPN9-201ENST00000306726 UBXN4Q92575 508 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 IFIT1P09914 478 aaKnown RBP16.95■□□□□ 0.3
PTPN9-201ENST00000306726 TOB2Q14106 344 aaPredicted RBP16.95■□□□□ 0.3
PTPN9-201ENST00000306726 ZNF790Q6PG37 636 aa16.95■□□□□ 0.3
PTPN9-201ENST00000306726 UTP14AQ9BVJ6 771 aaKnown RBP16.95■□□□□ 0.3
PTPN9-201ENST00000306726 NHSQ6T4R5 1651 aa16.94■□□□□ 0.3
PTPN9-201ENST00000306726 KLF18A0A0U1RQI7 1052 aa16.94■□□□□ 0.3
PTPN9-201ENST00000306726 STX1AQ16623 288 aa16.94■□□□□ 0.3
PTPN9-201ENST00000306726 TOGARAM1Q9Y4F4 1720 aa16.94■□□□□ 0.3
PTPN9-201ENST00000306726 XPO4Q9C0E2 1151 aaKnown RBP16.94■□□□□ 0.3
PTPN9-201ENST00000306726 DBNLQ9UJU6 430 aaKnown RBP16.94■□□□□ 0.3
PTPN9-201ENST00000306726 IQSEC3Q9UPP2 1182 aaPredicted RBP16.94■□□□□ 0.3
PTPN9-201ENST00000306726 PHACTR2O75167 634 aa16.94■□□□□ 0.3
PTPN9-201ENST00000306726 SLC3A2P08195 630 aaKnown RBP16.94■□□□□ 0.3
PTPN9-201ENST00000306726 KRT27Q7Z3Y8 459 aa16.94■□□□□ 0.3
PTPN9-201ENST00000306726 NUP133Q8WUM0 1156 aa16.94■□□□□ 0.3
PTPN9-201ENST00000306726 ANO10Q9NW15 660 aa16.94■□□□□ 0.3
PTPN9-201ENST00000306726 SEC31AO94979 1220 aaKnown RBP16.93■□□□□ 0.3
PTPN9-201ENST00000306726 ZNF827Q17R98 1081 aa16.93■□□□□ 0.3
PTPN9-201ENST00000306726 DPCR1Q3MIW9 517 aa16.93■□□□□ 0.3
PTPN9-201ENST00000306726 DHX37Q8IY37 1157 aaKnown RBP16.93■□□□□ 0.3
PTPN9-201ENST00000306726 GOLPH3LQ9H4A5 285 aa16.93■□□□□ 0.3
PTPN9-201ENST00000306726 SMTNL1A8MU46 457 aa16.93■□□□□ 0.3
PTPN9-201ENST00000306726 ANKRD13DQ6ZTN6 518 aa16.93■□□□□ 0.3
PTPN9-201ENST00000306726 HELBQ8NG08 1087 aaPredicted RBP16.93■□□□□ 0.3
PTPN9-201ENST00000306726 PHKBQ93100 1093 aa16.93■□□□□ 0.3
PTPN9-201ENST00000306726 ZNF396Q96N95 335 aaPredicted RBP16.93■□□□□ 0.3
PTPN9-201ENST00000306726 NAT10Q9H0A0 1025 aaKnown RBP16.93■□□□□ 0.3
PTPN9-201ENST00000306726 LRRC8AQ8IWT6 810 aa16.93■□□□□ 0.3
PTPN9-201ENST00000306726 hCG_1642624A0A1W2PR95 340 aa16.92■□□□□ 0.3
PTPN9-201ENST00000306726 HIP1O00291 1037 aa16.92■□□□□ 0.3
PTPN9-201ENST00000306726 ATP1A3P13637 1013 aa16.92■□□□□ 0.3
PTPN9-201ENST00000306726 MAP4K1Q92918 833 aa16.92■□□□□ 0.3
PTPN9-201ENST00000306726 HEG1Q9ULI3 1381 aa16.92■□□□□ 0.3
PTPN9-201ENST00000306726 STX17P56962 302 aa16.92■□□□□ 0.3
PTPN9-201ENST00000306726 ZKSCAN3Q9BRR0 538 aa16.92■□□□□ 0.3
PTPN9-201ENST00000306726 ZCCHC17Q9NP64 241 aaKnown RBP16.92■□□□□ 0.3
PTPN9-201ENST00000306726 UBR2Q8IWV8 1755 aa16.92■□□□□ 0.3
PTPN9-201ENST00000306726 CICQ96RK0 1608 aaPredicted RBP16.92■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms