RNA–Protein interactions for RNA: ENST00000303406.4

HOXC4-201, Transcript of homeobox C4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC4, Length 1,524 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4-201ENST00000303406 FOXD4L5Q5VV16 416 aaPredicted RBP23.01■■□□□ 1.27
HOXC4-201ENST00000303406 FOXD4L4Q8WXT5 416 aaPredicted RBP23.01■■□□□ 1.27
HOXC4-201ENST00000303406 BCL11BQ9C0K0 894 aaPredicted RBP23.01■■□□□ 1.27
HOXC4-201ENST00000303406 ZNF804BA4D1E1 1349 aa23■■□□□ 1.27
HOXC4-201ENST00000303406 ZBTB22O15209 634 aa23■■□□□ 1.27
HOXC4-201ENST00000303406 PFKFB2O60825 505 aa23■■□□□ 1.27
HOXC4-201ENST00000303406 FGAP02671 866 aa23■■□□□ 1.27
HOXC4-201ENST00000303406 MAP3K12Q12852 859 aa23■■□□□ 1.27
HOXC4-201ENST00000303406 RASGRF1Q13972 1273 aa23■■□□□ 1.27
HOXC4-201ENST00000303406 SEPT12Q8IYM1 358 aa23■■□□□ 1.27
HOXC4-201ENST00000303406 ZNF532Q9HCE3 1301 aa22.99■■□□□ 1.27
HOXC4-201ENST00000303406 KCNQ4P56696 695 aa22.99■■□□□ 1.27
HOXC4-201ENST00000303406 EVCP57679 992 aa22.99■■□□□ 1.27
HOXC4-201ENST00000303406 ALX1Q15699 326 aa22.99■■□□□ 1.27
HOXC4-201ENST00000303406 GPT2Q8TD30 523 aa22.99■■□□□ 1.27
HOXC4-201ENST00000303406 COL4A1P02462 1669 aa22.99■■□□□ 1.27
HOXC4-201ENST00000303406 MYO5AQ9Y4I1 1855 aaKnown RBP22.99■■□□□ 1.27
HOXC4-201ENST00000303406 IDH1O75874 414 aaKnown RBP22.98■■□□□ 1.27
HOXC4-201ENST00000303406 GTF2E1P29083 439 aaPredicted RBP22.98■■□□□ 1.27
HOXC4-201ENST00000303406 CSPP1Q1MSJ5 1256 aa22.98■■□□□ 1.27
HOXC4-201ENST00000303406 BRF1Q92994 677 aa22.98■■□□□ 1.27
HOXC4-201ENST00000303406 NLRP3Q96P20 1036 aa22.98■■□□□ 1.27
HOXC4-201ENST00000303406 FGD1P98174 961 aa22.98■■□□□ 1.27
HOXC4-201ENST00000303406 LARP1BQ659C4 914 aaKnown RBP22.98■■□□□ 1.27
HOXC4-201ENST00000303406 TPTE2Q6XPS3 522 aa22.98■■□□□ 1.27
HOXC4-201ENST00000303406 ARHGEF1Q92888 912 aaKnown RBP22.98■■□□□ 1.27
HOXC4-201ENST00000303406 ZNF274Q96GC6 653 aaPredicted RBP22.98■■□□□ 1.27
HOXC4-201ENST00000303406 SRP68Q9UHB9 627 aaKnown RBP22.98■■□□□ 1.27
HOXC4-201ENST00000303406 HMGB2P26583 209 aaKnown RBP22.97■■□□□ 1.27
HOXC4-201ENST00000303406 TTLL5Q6EMB2 1281 aa22.97■■□□□ 1.27
HOXC4-201ENST00000303406 C3orf67Q6ZVT6 689 aa22.97■■□□□ 1.27
HOXC4-201ENST00000303406 NBPF5PQ86XG9 351 aaPredicted RBP22.97■■□□□ 1.27
HOXC4-201ENST00000303406 SMARCC2Q8TAQ2 1214 aa22.97■■□□□ 1.27
HOXC4-201ENST00000303406 GNL3LQ9NVN8 582 aaKnown RBP22.97■■□□□ 1.27
HOXC4-201ENST00000303406 WWC3Q9ULE0 1092 aa22.97■■□□□ 1.27
HOXC4-201ENST00000303406 ZNF213O14771 459 aa22.96■■□□□ 1.27
HOXC4-201ENST00000303406 NCLP19338 710 aaKnown RBP22.96■■□□□ 1.27
HOXC4-201ENST00000303406 TRAPPC3LQ5T215 181 aa22.95■■□□□ 1.26
HOXC4-201ENST00000303406 BICDL1Q6ZP65 573 aa22.95■■□□□ 1.26
HOXC4-201ENST00000303406 MB21D2Q8IYB1 491 aaPredicted RBP22.95■■□□□ 1.26
HOXC4-201ENST00000303406 NCOA7Q8NI08 942 aa22.95■■□□□ 1.26
HOXC4-201ENST00000303406 STRBPQ96SI9 672 aaKnown RBP22.95■■□□□ 1.26
HOXC4-201ENST00000303406 GRPEL1Q9HAV7 217 aa22.95■■□□□ 1.26
HOXC4-201ENST00000303406 MINPP1Q9UNW1 487 aa22.95■■□□□ 1.26
HOXC4-201ENST00000303406 PNPLA7Q6ZV29 1317 aa22.94■■□□□ 1.26
HOXC4-201ENST00000303406 XRCC6P12956 609 aaKnown RBP eCLIP22.94■■□□□ 1.26
HOXC4-201ENST00000303406 GNAT2P19087 354 aa22.94■■□□□ 1.26
HOXC4-201ENST00000303406 MCM5P33992 734 aa22.94■■□□□ 1.26
HOXC4-201ENST00000303406 BCAMP50895 628 aa22.94■■□□□ 1.26
HOXC4-201ENST00000303406 HMGN5P82970 282 aaKnown RBP22.94■■□□□ 1.26
HOXC4-201ENST00000303406 CAVIN1Q6NZI2 390 aaKnown RBP22.94■■□□□ 1.26
HOXC4-201ENST00000303406 KLHL34Q8N239 644 aa22.94■■□□□ 1.26
HOXC4-201ENST00000303406 AIDAQ96BJ3 306 aa22.94■■□□□ 1.26
HOXC4-201ENST00000303406 PDS5AQ29RF7 1337 aaKnown RBP22.94■■□□□ 1.26
HOXC4-201ENST00000303406 A0A0G2JLW4 131 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 SEMA3EO15041 775 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 SCRN1Q12765 414 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 ZSCAN23Q3MJ62 389 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 FAM182BQ5T319 152 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 USP48Q86UV5 1035 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 SYAP1Q96A49 352 aaPredicted RBP22.93■■□□□ 1.26
HOXC4-201ENST00000303406 CHAMP1Q96JM3 812 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 ANKRD2Q9GZV1 360 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 KIF3AQ9Y496 699 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 CARMIL3Q8ND23 1372 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 TIAM2Q8IVF5 1701 aa22.93■■□□□ 1.26
HOXC4-201ENST00000303406 SNAP23O00161 211 aa22.92■■□□□ 1.26
HOXC4-201ENST00000303406 RFC4P35249 363 aa22.92■■□□□ 1.26
HOXC4-201ENST00000303406 RPS8P62241 208 aaKnown RBP22.92■■□□□ 1.26
HOXC4-201ENST00000303406 STK3Q13188 491 aa22.92■■□□□ 1.26
HOXC4-201ENST00000303406 SLC27A3Q5K4L6 730 aa22.92■■□□□ 1.26
HOXC4-201ENST00000303406 UBR3Q6ZT12 1888 aa22.92■■□□□ 1.26
HOXC4-201ENST00000303406 VPS37CA5D8V6 355 aaPredicted RBP22.92■■□□□ 1.26
HOXC4-201ENST00000303406 PATL2C9JE40 543 aaKnown RBP22.92■■□□□ 1.26
HOXC4-201ENST00000303406 FAM196AQ6ZSG2 479 aa22.92■■□□□ 1.26
HOXC4-201ENST00000303406 RALYLQ86SE5 291 aaKnown RBP22.92■■□□□ 1.26
HOXC4-201ENST00000303406 MAGEB6Q8N7X4 407 aa22.92■■□□□ 1.26
HOXC4-201ENST00000303406 CELF1Q92879 486 aaKnown RBP22.92■■□□□ 1.26
HOXC4-201ENST00000303406 APOBRQ0VD83 1088 aa22.91■■□□□ 1.26
HOXC4-201ENST00000303406 CAVIN4Q5BKX8 364 aa22.91■■□□□ 1.26
HOXC4-201ENST00000303406 TMED8Q6PL24 325 aaPredicted RBP22.91■■□□□ 1.26
HOXC4-201ENST00000303406 GAS2L3Q86XJ1 694 aa22.91■■□□□ 1.26
HOXC4-201ENST00000303406 LRRC2Q9BYS8 371 aa22.91■■□□□ 1.26
HOXC4-201ENST00000303406 QTRT2Q9H974 415 aaKnown RBP22.91■■□□□ 1.26
HOXC4-201ENST00000303406 DENND2AQ9ULE3 1009 aa22.91■■□□□ 1.26
HOXC4-201ENST00000303406 IGSF3O75054 1194 aa22.9■■□□□ 1.26
HOXC4-201ENST00000303406 UBE2HP62256 183 aa22.9■■□□□ 1.26
HOXC4-201ENST00000303406 TRDNQ13061 729 aa22.9■■□□□ 1.26
HOXC4-201ENST00000303406 NSUN7Q8NE18 718 aaKnown RBP22.9■■□□□ 1.26
HOXC4-201ENST00000303406 CNPY2Q9Y2B0 182 aa22.9■■□□□ 1.26
HOXC4-201ENST00000303406 TCHHQ07283 1943 aa22.89■■□□□ 1.26
HOXC4-201ENST00000303406 PRC1O43663 620 aa22.89■■□□□ 1.26
HOXC4-201ENST00000303406 PDIA3P30101 505 aaKnown RBP22.89■■□□□ 1.26
HOXC4-201ENST00000303406 HAND2P61296 217 aa22.89■■□□□ 1.26
HOXC4-201ENST00000303406 FBXO33Q7Z6M2 555 aa22.89■■□□□ 1.26
HOXC4-201ENST00000303406 AMIGO3Q86WK7 504 aa22.89■■□□□ 1.26
HOXC4-201ENST00000303406 RGS22Q8NE09 1264 aa22.89■■□□□ 1.26
HOXC4-201ENST00000303406 SALL1Q9NSC2 1324 aa22.89■■□□□ 1.25
HOXC4-201ENST00000303406 TNRC6CQ9HCJ0 1690 aaKnown RBP22.89■■□□□ 1.25
HOXC4-201ENST00000303406 TAF1P21675 1872 aa22.88■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 113.2 ms