RNA–Protein interactions for RNA: ENST00000299138.11

VPS35-201, Transcript of VPS35, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS35, Length 6,790 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-201ENST00000299138 CERS3Q8IU89 383 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 PHACTR3Q96KR7 559 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 CEP131Q9UPN4 1083 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 CNPY2Q9Y2B0 182 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 TPD52P55327 224 aaPredicted RBP7.3□□□□□ -1.24
VPS35-201ENST00000299138 LEO1Q8WVC0 666 aaPredicted RBP7.3□□□□□ -1.24
VPS35-201ENST00000299138 MED4Q9NPJ6 270 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 NOL12Q9UGY1 213 aaKnown RBP eCLIP7.3□□□□□ -1.24
VPS35-201ENST00000299138 EXOC6BQ9Y2D4 811 aa7.3□□□□□ -1.24
VPS35-201ENST00000299138 CCDC151A5D8V7 595 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 PPP1R2P41236 205 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 EIF4A2Q14240 407 aaKnown RBP7.29□□□□□ -1.24
VPS35-201ENST00000299138 DBN1Q16643 649 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 CARMIL3Q8ND23 1372 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 ERICH2A1L162 156 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 CCDC69A6NI79 296 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 TRDNQ13061 729 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 CCDC178Q5BJE1 867 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 TTC16Q8NEE8 873 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 IKQ13123 557 aaPredicted RBP7.29□□□□□ -1.24
VPS35-201ENST00000299138 ANO6Q4KMQ2 910 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 MAATS1Q7Z4T9 603 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 DDX27Q96GQ7 796 aaKnown RBP7.29□□□□□ -1.24
VPS35-201ENST00000299138 HELLSQ9NRZ9 838 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 IKBKGQ9Y6K9 419 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 PIP4K2BP78356 416 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 SETDB1Q15047 1291 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 ARHGAP29Q52LW3 1261 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 ANKLE2Q86XL3 938 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 ZNF274Q96GC6 653 aaPredicted RBP7.29□□□□□ -1.24
VPS35-201ENST00000299138 RASSF4Q9H2L5 321 aa7.29□□□□□ -1.24
VPS35-201ENST00000299138 RPS6KB1P23443 525 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 LMNB2Q03252 620 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 PPP1R42Q7Z4L9 355 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 ZC4H2Q9NQZ6 224 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP7.28□□□□□ -1.245e-8■■■□□ 19
VPS35-201ENST00000299138 ADALQ6DHV7 355 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 NEK1Q96PY6 1258 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 PPP1R12CQ9BZL4 782 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 CBX8Q9HC52 389 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 C1orf141Q5JVX7 400 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 PRPF40BQ6NWY9 871 aaKnown RBP7.28□□□□□ -1.24
VPS35-201ENST00000299138 KSR2Q6VAB6 950 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 GOLGA5Q8TBA6 731 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 XBP1P17861 261 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 FBXL16Q8N461 479 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 DSCC1Q9BVC3 393 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 TSPYL2Q9H2G4 693 aaPredicted RBP7.28□□□□□ -1.24
VPS35-201ENST00000299138 A0A1B0GUA9 196 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 SLC3A2P08195 630 aaKnown RBP7.28□□□□□ -1.24
VPS35-201ENST00000299138 NCBP1Q09161 790 aaKnown RBP7.28□□□□□ -1.24
VPS35-201ENST00000299138 WASHC4Q2M389 1173 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 CEP128Q6ZU80 1094 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 RAB3IL1Q8TBN0 382 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 GOLGA1Q92805 767 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 C16orf45Q96MC5 204 aaPredicted RBP7.28□□□□□ -1.24
VPS35-201ENST00000299138 TRMT1Q9NXH9 659 aaKnown RBP7.28□□□□□ -1.24
VPS35-201ENST00000299138 PFKFB2O60825 505 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 PPM1FP49593 454 aaPredicted RBP7.28□□□□□ -1.24
VPS35-201ENST00000299138 RCAN1P53805 252 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 SPTY2D1Q68D10 685 aaPredicted RBP7.28□□□□□ -1.24
VPS35-201ENST00000299138 CDK5RAP3Q96JB5 506 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 YY1AP1Q9H869 796 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 MKL2Q9ULH7 1088 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 RBM8AQ9Y5S9 174 aaKnown RBP7.28□□□□□ -1.24
VPS35-201ENST00000299138 COL15A1P39059 1388 aa7.28□□□□□ -1.24
VPS35-201ENST00000299138 ARHGEF28Q8N1W1 1705 aaKnown RBP7.27□□□□□ -1.24
VPS35-201ENST00000299138 PSMC4P43686 418 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 CKAP4Q07065 602 aaKnown RBP7.27□□□□□ -1.25
VPS35-201ENST00000299138 CREB3L3Q68CJ9 461 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 AMOTL1Q8IY63 956 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 GTF3C6Q969F1 213 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 RABGAP1Q9Y3P9 1069 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 CRB1P82279 1406 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 CCDC196A0A1B0GTZ2 297 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 STX10O60499 249 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 KRT18P05783 430 aaKnown RBP7.27□□□□□ -1.25
VPS35-201ENST00000299138 PTGS1P23219 599 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 VPS41P49754 854 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 KIF4BQ2VIQ3 1234 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 NYAP1Q6ZVC0 841 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 DHX32Q7L7V1 743 aaKnown RBP7.27□□□□□ -1.25
VPS35-201ENST00000299138 LRRC8AQ8IWT6 810 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 PPFIBP2Q8ND30 876 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 ZHX3Q9H4I2 956 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 HOMER2Q9NSB8 354 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 TTF2Q9UNY4 1162 aaKnown RBP7.27□□□□□ -1.25
VPS35-201ENST00000299138 TBX22Q9Y458 520 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 CD163L1Q9NR16 1453 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 APBA1Q02410 837 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 DNM1Q05193 864 aaKnown RBP7.27□□□□□ -1.25
VPS35-201ENST00000299138 PRR16Q569H4 304 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 RALYLQ86SE5 291 aaKnown RBP7.27□□□□□ -1.25
VPS35-201ENST00000299138 PPIL4Q8WUA2 492 aaKnown RBP eCLIP7.27□□□□□ -1.25
VPS35-201ENST00000299138 BICDL2A1A5D9 508 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 FERP16591 822 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 ATICP31939 592 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 MYL5Q02045 173 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 GIMAP6Q6P9H5 292 aa7.27□□□□□ -1.25
VPS35-201ENST00000299138 HNRNPLLQ8WVV9 542 aaKnown RBP7.27□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms