RNA–Protein interactions for RNA: ENST00000296098.4

TRIM54-201, Transcript of tripartite motif containing 54, humanhuman

TSL 1 (best) BASIC

Gene TRIM54, Length 2,027 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-201ENST00000296098 PIH1D3Q9NQM4 214 aaKnown RBP28.25■■■□□ 2.11
TRIM54-201ENST00000296098 MYO5AQ9Y4I1 1855 aaKnown RBP28.25■■■□□ 2.11
TRIM54-201ENST00000296098 HS1BP3Q53T59 392 aa28.25■■■□□ 2.11
TRIM54-201ENST00000296098 CHMP4CQ96CF2 233 aa28.25■■■□□ 2.11
TRIM54-201ENST00000296098 SPATA32Q96LK8 384 aa28.25■■■□□ 2.11
TRIM54-201ENST00000296098 BCORQ6W2J9 1755 aa28.24■■■□□ 2.11
TRIM54-201ENST00000296098 FAM177BA6PVY3 158 aa28.24■■■□□ 2.11
TRIM54-201ENST00000296098 CTDNEP1O95476 244 aa28.24■■■□□ 2.11
TRIM54-201ENST00000296098 SLC9C2Q5TAH2 1124 aa28.24■■■□□ 2.11
TRIM54-201ENST00000296098 ZSCAN16Q9H4T2 348 aaPredicted RBP28.24■■■□□ 2.11
TRIM54-201ENST00000296098 NAP1L2Q9ULW6 460 aaPredicted RBP28.24■■■□□ 2.11
TRIM54-201ENST00000296098 MYH15Q9Y2K3 1946 aa28.24■■■□□ 2.11
TRIM54-201ENST00000296098 SLC5A1P13866 664 aa28.23■■■□□ 2.11
TRIM54-201ENST00000296098 PDIA3P30101 505 aaKnown RBP28.23■■■□□ 2.11
TRIM54-201ENST00000296098 CCT2P78371 535 aaKnown RBP28.23■■■□□ 2.11
TRIM54-201ENST00000296098 NAA16Q6N069 864 aaPredicted RBP28.23■■■□□ 2.11
TRIM54-201ENST00000296098 HELBQ8NG08 1087 aaPredicted RBP28.23■■■□□ 2.11
TRIM54-201ENST00000296098 SMARCC1Q92922 1105 aaPredicted RBP28.23■■■□□ 2.11
TRIM54-201ENST00000296098 SALL1Q9NSC2 1324 aa28.22■■■□□ 2.11
TRIM54-201ENST00000296098 IDH1O75874 414 aaKnown RBP28.22■■■□□ 2.11
TRIM54-201ENST00000296098 UBE3CQ15386 1083 aa28.22■■■□□ 2.11
TRIM54-201ENST00000296098 ZSCAN30Q86W11 494 aa28.22■■■□□ 2.11
TRIM54-201ENST00000296098 LEO1Q8WVC0 666 aaPredicted RBP28.22■■■□□ 2.11
TRIM54-201ENST00000296098 MPHOSPH8Q99549 860 aa28.22■■■□□ 2.11
TRIM54-201ENST00000296098 DOCK2Q92608 1830 aa28.21■■■□□ 2.11
TRIM54-201ENST00000296098 EVCP57679 992 aa28.21■■■□□ 2.11
TRIM54-201ENST00000296098 MB21D2Q8IYB1 491 aaPredicted RBP28.21■■■□□ 2.11
TRIM54-201ENST00000296098 NCOA5Q9HCD5 579 aaKnown RBP28.21■■■□□ 2.11
TRIM54-201ENST00000296098 RTL9Q8NET4 1388 aa28.21■■■□□ 2.11
TRIM54-201ENST00000296098 ZNF831Q5JPB2 1677 aa28.21■■■□□ 2.11
TRIM54-201ENST00000296098 NTSR2O95665 410 aa28.21■■■□□ 2.11
TRIM54-201ENST00000296098 MCM5P33992 734 aa28.21■■■□□ 2.11
TRIM54-201ENST00000296098 CCDC152Q4G0S7 254 aa28.21■■■□□ 2.11
TRIM54-201ENST00000296098 NCOA7Q8NI08 942 aa28.21■■■□□ 2.11
TRIM54-201ENST00000296098 TFIP11Q9UBB9 837 aaKnown RBP28.21■■■□□ 2.11
TRIM54-201ENST00000296098 ZNF213O14771 459 aa28.2■■■□□ 2.11
TRIM54-201ENST00000296098 UVSSAQ2YD98 709 aa28.2■■■□□ 2.11
TRIM54-201ENST00000296098 NIP7Q9Y221 180 aaKnown RBP eCLIP28.2■■■□□ 2.11
TRIM54-201ENST00000296098 PRC1O43663 620 aa28.19■■■□□ 2.1
TRIM54-201ENST00000296098 PDE6AP16499 860 aa28.19■■■□□ 2.1
TRIM54-201ENST00000296098 RALYLQ86SE5 291 aaKnown RBP28.19■■■□□ 2.1
TRIM54-201ENST00000296098 ZNF532Q9HCE3 1301 aa28.19■■■□□ 2.1
TRIM54-201ENST00000296098 GOLGA6L4A6NEF3 574 aa28.19■■■□□ 2.1
TRIM54-201ENST00000296098 GIMAP6Q6P9H5 292 aa28.19■■■□□ 2.1
TRIM54-201ENST00000296098 FUCA2Q9BTY2 467 aa28.19■■■□□ 2.1
TRIM54-201ENST00000296098 SEC31BQ9NQW1 1179 aa28.19■■■□□ 2.1
TRIM54-201ENST00000296098 WDR19Q8NEZ3 1342 aa28.19■■■□□ 2.1
TRIM54-201ENST00000296098 ZNF652Q9Y2D9 606 aa28.18■■■□□ 2.1
TRIM54-201ENST00000296098 SPATA5Q8NB90 893 aa28.17■■■□□ 2.1
TRIM54-201ENST00000296098 GPHNQ9NQX3 736 aaPredicted RBP28.17■■■□□ 2.1
TRIM54-201ENST00000296098 WWC3Q9ULE0 1092 aa28.17■■■□□ 2.1
TRIM54-201ENST00000296098 LIG1P18858 919 aa28.16■■■□□ 2.1
TRIM54-201ENST00000296098 IGHMBP2P38935 993 aaKnown RBP28.16■■■□□ 2.1
TRIM54-201ENST00000296098 CARMIL3Q8ND23 1372 aa28.16■■■□□ 2.1
TRIM54-201ENST00000296098 TCRBV5S4A2TA0A5A2 114 aa28.16■■■□□ 2.1
TRIM54-201ENST00000296098 FOSBP53539 338 aa28.16■■■□□ 2.1
TRIM54-201ENST00000296098 ANTXR2P58335 489 aa28.16■■■□□ 2.1
TRIM54-201ENST00000296098 NUP62CLQ9H1M0 184 aa28.16■■■□□ 2.1
TRIM54-201ENST00000296098 CFAP45Q9UL16 551 aa28.16■■■□□ 2.1
TRIM54-201ENST00000296098 KCNQ2O43526 872 aa28.15■■■□□ 2.1
TRIM54-201ENST00000296098 PIP4K2BP78356 416 aa28.14■■■□□ 2.1
TRIM54-201ENST00000296098 RASGRF1Q13972 1273 aa28.14■■■□□ 2.1
TRIM54-201ENST00000296098 KLF18A0A0U1RQI7 1052 aa28.14■■■□□ 2.09
TRIM54-201ENST00000296098 MSNP26038 577 aaKnown RBP28.14■■■□□ 2.09
TRIM54-201ENST00000296098 NBPF3Q9H094 633 aa28.14■■■□□ 2.09
TRIM54-201ENST00000296098 GOLGA8BA8MQT2 603 aa28.13■■■□□ 2.09
TRIM54-201ENST00000296098 TRDNQ13061 729 aa28.13■■■□□ 2.09
TRIM54-201ENST00000296098 AIDAQ96BJ3 306 aa28.13■■■□□ 2.09
TRIM54-201ENST00000296098 CCDC39Q9UFE4 941 aa28.13■■■□□ 2.09
TRIM54-201ENST00000296098 APPP05067 770 aa28.13■■■□□ 2.09
TRIM54-201ENST00000296098 DDX19AQ9NUU7 478 aaKnown RBP28.13■■■□□ 2.09
TRIM54-201ENST00000296098 DHX16O60231 1041 aaKnown RBP28.12■■■□□ 2.09
TRIM54-201ENST00000296098 MAP3K12Q12852 859 aa28.12■■■□□ 2.09
TRIM54-201ENST00000296098 MAP3K11Q16584 847 aa28.12■■■□□ 2.09
TRIM54-201ENST00000296098 TBC1D10CQ8IV04 446 aa28.12■■■□□ 2.09
TRIM54-201ENST00000296098 SNAP23O00161 211 aa28.11■■■□□ 2.09
TRIM54-201ENST00000296098 CCDC192P0DO97 292 aa28.11■■■□□ 2.09
TRIM54-201ENST00000296098 BICD2Q8TD16 824 aa28.11■■■□□ 2.09
TRIM54-201ENST00000296098 PGBD1Q96JS3 809 aa28.11■■■□□ 2.09
TRIM54-201ENST00000296098 DACT1Q9NYF0 836 aa28.11■■■□□ 2.09
TRIM54-201ENST00000296098 NOL7Q9UMY1 257 aaKnown RBP28.11■■■□□ 2.09
TRIM54-201ENST00000296098 TOM1O60784 492 aa28.11■■■□□ 2.09
TRIM54-201ENST00000296098 FAM98CQ17RN3 349 aaKnown RBP28.11■■■□□ 2.09
TRIM54-201ENST00000296098 STRBPQ96SI9 672 aaKnown RBP28.11■■■□□ 2.09
TRIM54-201ENST00000296098 HPS5Q9UPZ3 1129 aa28.11■■■□□ 2.09
TRIM54-201ENST00000296098 ZMYM6O95789 1325 aa28.11■■■□□ 2.09
TRIM54-201ENST00000296098 SCN7AQ01118 1682 aa28.1■■■□□ 2.09
TRIM54-201ENST00000296098 C4AP0C0L4 1744 aa28.1■■■□□ 2.09
TRIM54-201ENST00000296098 C4BP0C0L5 1744 aa28.1■■■□□ 2.09
TRIM54-201ENST00000296098 CLEC4GQ6UXB4 293 aa28.1■■■□□ 2.09
TRIM54-201ENST00000296098 CASZ1Q86V15 1759 aa28.1■■■□□ 2.09
TRIM54-201ENST00000296098 PPFIA3O75145 1194 aa28.09■■■□□ 2.09
TRIM54-201ENST00000296098 FDPSP14324 419 aaKnown RBP28.09■■■□□ 2.09
TRIM54-201ENST00000296098 ADD1P35611 737 aaKnown RBP28.09■■■□□ 2.09
TRIM54-201ENST00000296098 ATL3Q6DD88 541 aa28.09■■■□□ 2.09
TRIM54-201ENST00000296098 MAGEB6Q8N7X4 407 aa28.09■■■□□ 2.09
TRIM54-201ENST00000296098 LINC00116Q8NCU8 138 aa28.09■■■□□ 2.09
TRIM54-201ENST00000296098 A0A1B0GUL6 1792 aa28.09■■■□□ 2.09
TRIM54-201ENST00000296098 BCL9LQ86UU0 1499 aa28.09■■■□□ 2.09
TRIM54-201ENST00000296098 TNMDQ9H2S6 317 aa28.09■■■□□ 2.09
Retrieved 100 of 20,778 RNA–protein pairs in 81.9 ms