RNA–Protein interactions for RNA: ENST00000291842.9

SHKBP1-201, Transcript of SH3KBP1 binding protein 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHKBP1, Length 2,363 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-201ENST00000291842 MCM5P33992 734 aa21.56■■□□□ 1.04
SHKBP1-201ENST00000291842 CCDC102BQ68D86 513 aa21.56■■□□□ 1.04
SHKBP1-201ENST00000291842 OTUD7BQ6GQQ9 843 aa21.56■■□□□ 1.04
SHKBP1-201ENST00000291842 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.56■■□□□ 1.045e-7■■■■□ 23.7
SHKBP1-201ENST00000291842 TTC12Q9H892 705 aaPredicted RBP21.56■■□□□ 1.04
SHKBP1-201ENST00000291842 NUP98P52948 1817 aa21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 FDPSP14324 419 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 IL6STP40189 918 aaPredicted RBP21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 PDZRN4Q6ZMN7 1036 aaPredicted RBP21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 LUZP1Q86V48 1076 aa21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 KLF18A0A0U1RQI7 1052 aa21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 APPP05067 770 aa21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 ADD2P35612 726 aa21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 ANTXR2P58335 489 aa21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 MB21D2Q8IYB1 491 aaPredicted RBP21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 NKX2-3Q8TAU0 364 aa21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 USP28Q96RU2 1077 aa21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 CLSTN2Q9H4D0 955 aa21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 DDX19AQ9NUU7 478 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 R3HCC1Q9Y3T6 440 aaKnown RBP21.55■■□□□ 1.04
SHKBP1-201ENST00000291842 CARMIL3Q8ND23 1372 aa21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 ANO6Q4KMQ2 910 aa21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 ZNF34Q8IZ26 560 aa21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 KIF3AQ9Y496 699 aa21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 AKAP11Q9UKA4 1901 aa21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 ERVV-1B6SEH8 477 aa21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 SUSD4Q5VX71 490 aa21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 RALYLQ86SE5 291 aaKnown RBP21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 NCOA7Q8NI08 942 aa21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 WWC3Q9ULE0 1092 aa21.54■■□□□ 1.04
SHKBP1-201ENST00000291842 COL14A1Q05707 1796 aaKnown RBP21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 GOLGA8BA8MQT2 603 aa21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 ILDR1Q86SU0 546 aaPredicted RBP21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 FAM200AQ8TCP9 573 aa21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 NBPF3Q9H094 633 aa21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 ZNF532Q9HCE3 1301 aa21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 MYH3P11055 1940 aa21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 SPC24Q8NBT2 197 aa21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 GJB4Q9NTQ9 266 aa21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 TAOK2Q9UL54 1235 aa21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 MYO5AQ9Y4I1 1855 aaKnown RBP21.53■■□□□ 1.04
SHKBP1-201ENST00000291842 SEC31BQ9NQW1 1179 aa21.52■■□□□ 1.04
SHKBP1-201ENST00000291842 HPS5Q9UPZ3 1129 aa21.52■■□□□ 1.04
SHKBP1-201ENST00000291842 SLIT2O94813 1529 aa21.52■■□□□ 1.04
SHKBP1-201ENST00000291842 ABCC12Q96J65 1359 aa21.52■■□□□ 1.04
SHKBP1-201ENST00000291842 ANKRD36CQ5JPF3 1778 aa21.52■■□□□ 1.04
SHKBP1-201ENST00000291842 ATP6V1AP38606 617 aa21.52■■□□□ 1.04
SHKBP1-201ENST00000291842 INTS5Q6P9B9 1019 aaKnown RBP21.52■■□□□ 1.04
SHKBP1-201ENST00000291842 MYH7P12883 1935 aa21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 EVCP57679 992 aa21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 ZSCAN25Q6NSZ9 544 aa21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 CCAR1Q8IX12 1150 aaKnown RBP21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 RCOR1Q9UKL0 485 aa21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 PDE6AP16499 860 aa21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 EIF5P55010 431 aaKnown RBP21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 TTF1Q15361 905 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 PUM3Q15397 648 aaKnown RBP21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 TBC1D10CQ8IV04 446 aa21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 C17orf53Q8N3J3 647 aaPredicted RBP21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 GOLPH3LQ9H4A5 285 aa21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 CBX8Q9HC52 389 aa21.51■■□□□ 1.03
SHKBP1-201ENST00000291842 CRKLP46109 303 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 KIAA2012Q0VF49 1180 aa21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 DDB1Q16531 1140 aa21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 FBXL16Q8N461 479 aa21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 INCENPQ9NQS7 918 aa21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 SASS6Q6UVJ0 657 aa21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 RBM43Q6ZSC3 357 aaKnown RBP21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 KLHL34Q8N239 644 aa21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 LPIN2Q92539 896 aa21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 ZNF512BQ96KM6 892 aaPredicted RBP21.5■■□□□ 1.03
SHKBP1-201ENST00000291842 DOT1LQ8TEK3 1739 aa21.49■■□□□ 1.03
SHKBP1-201ENST00000291842 COL16A1Q07092 1604 aaPredicted RBP21.49■■□□□ 1.03
SHKBP1-201ENST00000291842 POLR3DP05423 398 aaPredicted RBP21.49■■□□□ 1.03
SHKBP1-201ENST00000291842 ARID4AP29374 1257 aaPredicted RBP21.49■■□□□ 1.03
SHKBP1-201ENST00000291842 DNAJC25Q9H1X3 360 aa21.49■■□□□ 1.03
SHKBP1-201ENST00000291842 CCDC87Q9NVE4 849 aa21.49■■□□□ 1.03
SHKBP1-201ENST00000291842 ROBO1Q9Y6N7 1651 aa21.49■■□□□ 1.03
SHKBP1-201ENST00000291842 CPLX1O14810 134 aa21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 RXRAP19793 462 aa21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 ME1P48163 572 aa21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 CYB5R4Q7L1T6 521 aa21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 ZNF396Q96N95 335 aaPredicted RBP21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 MPHOSPH8Q99549 860 aa21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 ORC3Q9UBD5 711 aaPredicted RBP21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 FGFR2P21802 821 aa21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 TRDNQ13061 729 aa21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 UBE3CQ15386 1083 aa21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 C8orf76Q96K31 380 aa21.48■■□□□ 1.03
SHKBP1-201ENST00000291842 MROH5Q6ZUA9 1318 aa21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 UQCRFS1P1P0C7P4 283 aa21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 ITPK1Q13572 414 aa21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 RASGRF1Q13972 1273 aa21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 MARCH10Q8NA82 808 aaPredicted RBP21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 SPATA5Q8NB90 893 aa21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 AIDAQ96BJ3 306 aa21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 UTP14AQ9BVJ6 771 aaKnown RBP21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 SENP2Q9HC62 589 aa21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 MYH15Q9Y2K3 1946 aa21.47■■□□□ 1.03
SHKBP1-201ENST00000291842 A0A087WWV3 80 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 8.8 ms