RNA–Protein interactions for RNA: ENST00000267199.8

VPS33A-201, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS33A, Length 4,586 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-201ENST00000267199 CAVIN4Q5BKX8 364 aa13.22□□□□□ -0.29
VPS33A-201ENST00000267199 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.22□□□□□ -0.29
VPS33A-201ENST00000267199 TAF4BQ92750 862 aa13.22□□□□□ -0.29
VPS33A-201ENST00000267199 EAF2Q96CJ1 260 aaPredicted RBP13.22□□□□□ -0.29
VPS33A-201ENST00000267199 DCAF5Q96JK2 942 aa13.22□□□□□ -0.29
VPS33A-201ENST00000267199 TEX13AQ9BXU3 409 aaPredicted RBP13.22□□□□□ -0.29
VPS33A-201ENST00000267199 CALRP27797 417 aaKnown RBP13.22□□□□□ -0.29
VPS33A-201ENST00000267199 JAK2O60674 1132 aa13.21□□□□□ -0.29
VPS33A-201ENST00000267199 HLTFQ14527 1009 aaKnown RBP eCLIP13.21□□□□□ -0.29
VPS33A-201ENST00000267199 OTUD7BQ6GQQ9 843 aa13.21□□□□□ -0.29
VPS33A-201ENST00000267199 TM6SF1Q9BZW5 370 aa13.21□□□□□ -0.29
VPS33A-201ENST00000267199 CCDC113Q9H0I3 377 aa13.21□□□□□ -0.29
VPS33A-201ENST00000267199 STAP2Q9UGK3 403 aa13.21□□□□□ -0.29
VPS33A-201ENST00000267199 CHD1O14646 1710 aa13.21□□□□□ -0.29
VPS33A-201ENST00000267199 CCDC175P0C221 793 aa13.21□□□□□ -0.29
VPS33A-201ENST00000267199 MCM3P25205 808 aa13.21□□□□□ -0.29
VPS33A-201ENST00000267199 IRX3P78415 501 aaPredicted RBP13.21□□□□□ -0.29
VPS33A-201ENST00000267199 GCKRQ14397 625 aa13.21□□□□□ -0.29
VPS33A-201ENST00000267199 ZNF569Q5MCW4 686 aa13.21□□□□□ -0.3
VPS33A-201ENST00000267199 BEND3Q5T5X7 828 aa13.21□□□□□ -0.3
VPS33A-201ENST00000267199 IQSEC3Q9UPP2 1182 aaPredicted RBP13.21□□□□□ -0.3
VPS33A-201ENST00000267199 SSH2Q76I76 1423 aa13.21□□□□□ -0.3
VPS33A-201ENST00000267199 RXRAP19793 462 aa13.2□□□□□ -0.3
VPS33A-201ENST00000267199 FAM160A1Q05DH4 1040 aa13.2□□□□□ -0.3
VPS33A-201ENST00000267199 TDRD12Q587J7 1177 aaKnown RBP13.2□□□□□ -0.3
VPS33A-201ENST00000267199 PTCH1Q13635 1447 aa13.2□□□□□ -0.3
VPS33A-201ENST00000267199 GIGYF1O75420 1035 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-201ENST00000267199 TICAM2Q86XR7 235 aa13.2□□□□□ -0.3
VPS33A-201ENST00000267199 ZNF496Q96IT1 587 aaPredicted RBP13.2□□□□□ -0.3
VPS33A-201ENST00000267199 CAPZA3Q96KX2 299 aa13.2□□□□□ -0.3
VPS33A-201ENST00000267199 A0A1B0GUL7 405 aa13.2□□□□□ -0.3
VPS33A-201ENST00000267199 GOLGA6L7A0A1B0GV03 622 aa13.2□□□□□ -0.3
VPS33A-201ENST00000267199 CACNA2D4Q7Z3S7 1137 aa13.2□□□□□ -0.3
VPS33A-201ENST00000267199 RABEP2Q9H5N1 569 aa13.2□□□□□ -0.3
VPS33A-201ENST00000267199 SEPT11Q9NVA2 429 aaKnown RBP13.2□□□□□ -0.3
VPS33A-201ENST00000267199 SPHKAPQ2M3C7 1700 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 A0A0D9SFI3 127 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 UQCRFS1P1P0C7P4 283 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 WTAPQ15007 396 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 CATIPQ7Z7H3 387 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 TTC6Q86TZ1 520 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 HELBQ8NG08 1087 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-201ENST00000267199 NEK11Q8NG66 645 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 MTMR6Q9Y217 621 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 NLRP5P59047 1200 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 TTC31Q49AM3 519 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-201ENST00000267199 TCEAL9Q9UHQ7 104 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 NR1I2O75469 434 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 ZNF594Q96JF6 807 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-201ENST00000267199 MKNK2Q9HBH9 465 aa13.19□□□□□ -0.3
VPS33A-201ENST00000267199 POLR1AO95602 1720 aaPredicted RBP13.19□□□□□ -0.3
VPS33A-201ENST00000267199 CTAGE9A4FU28 777 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 EYA2O00167 538 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 EXOC5O00471 708 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 KBTBD3Q8NAB2 608 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 ZNF652Q9Y2D9 606 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 USO1O60763 962 aaKnown RBP13.18□□□□□ -0.3
VPS33A-201ENST00000267199 MTIF2P46199 727 aaKnown RBP13.18□□□□□ -0.3
VPS33A-201ENST00000267199 ADCK5Q3MIX3 580 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 FKBP15Q5T1M5 1219 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 MAATS1Q7Z4T9 603 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 BAG1Q99933 345 aaPredicted RBP13.18□□□□□ -0.3
VPS33A-201ENST00000267199 GUCA1BQ9UMX6 200 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 USP5P45974 858 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 CCDC43Q96MW1 224 aaKnown RBP13.18□□□□□ -0.3
VPS33A-201ENST00000267199 RGS12O14924 1447 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 IGSF1Q8N6C5 1336 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 OAS2P29728 719 aaKnown RBP13.18□□□□□ -0.3
VPS33A-201ENST00000267199 SPECC1Q5M775 1068 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 KIAA1524Q8TCG1 905 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 TPCN1Q9ULQ1 816 aa13.18□□□□□ -0.3
VPS33A-201ENST00000267199 ABCC3O15438 1527 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 A0A087WWV3 80 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 MYL5Q02045 173 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 CUL4AQ13619 759 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 CCDC178Q5BJE1 867 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 C19orf44Q9H6X5 657 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 HELLSQ9NRZ9 838 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 RNF17Q9BXT8 1623 aaKnown RBP13.17□□□□□ -0.3
VPS33A-201ENST00000267199 TUBB4AP04350 444 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 RTN1Q16799 776 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 CEP112Q8N8E3 955 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 PLBD2Q8NHP8 589 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 FAM89AQ96GI7 184 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 LSG1Q9H089 658 aaKnown RBP13.17□□□□□ -0.3
VPS33A-201ENST00000267199 NEFHP12036 1026 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 FANCCQ00597 558 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 ATRIPQ8WXE1 791 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 DHX58Q96C10 678 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 ZSWIM6Q9HCJ5 1215 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 ROBO2Q9HCK4 1378 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 E9PCH4 1651 aa13.17□□□□□ -0.3
VPS33A-201ENST00000267199 CDK12Q9NYV4 1490 aaPredicted RBP13.16□□□□□ -0.3
VPS33A-201ENST00000267199 CCDC194A0A1B0GVG4 234 aa13.16□□□□□ -0.3
VPS33A-201ENST00000267199 A1BGP04217 495 aa13.16□□□□□ -0.3
VPS33A-201ENST00000267199 TRIM21P19474 475 aaKnown RBP13.16□□□□□ -0.3
VPS33A-201ENST00000267199 IFFO1Q0D2I5 559 aa13.16□□□□□ -0.3
VPS33A-201ENST00000267199 RRAGBQ5VZM2 374 aa13.16□□□□□ -0.3
VPS33A-201ENST00000267199 DZIP1Q86YF9 867 aaKnown RBP13.16□□□□□ -0.3
VPS33A-201ENST00000267199 XPO4Q9C0E2 1151 aaKnown RBP13.16□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms