RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 NSFL1CQ9UNZ2 370 aaKnown RBP19.72■□□□□ 0.75
USP4-201ENST00000265560 APPBP2Q92624 585 aa19.71■□□□□ 0.75
USP4-201ENST00000265560 EPB41L2O43491 1005 aaKnown RBP19.71■□□□□ 0.75
USP4-201ENST00000265560 ZSWIM6Q9HCJ5 1215 aa19.71■□□□□ 0.75
USP4-201ENST00000265560 STK11IPQ8N1F8 1099 aa19.71■□□□□ 0.75
USP4-201ENST00000265560 NECAB1Q8N987 351 aa19.71■□□□□ 0.75
USP4-201ENST00000265560 PNPLA7Q6ZV29 1317 aa19.7■□□□□ 0.74
USP4-201ENST00000265560 UBE4AQ14139 1066 aa19.7■□□□□ 0.74
USP4-201ENST00000265560 CAVIN4Q5BKX8 364 aa19.7■□□□□ 0.74
USP4-201ENST00000265560 ZNF512BQ96KM6 892 aaPredicted RBP19.7■□□□□ 0.74
USP4-201ENST00000265560 GRAPQ13588 217 aa19.7■□□□□ 0.74
USP4-201ENST00000265560 GRAPLQ8TC17 118 aaPredicted RBP19.7■□□□□ 0.74
USP4-201ENST00000265560 U3KPZ7 1027 aaPredicted RBP19.7■□□□□ 0.74
USP4-201ENST00000265560 FGAP02671 866 aa19.69■□□□□ 0.74
USP4-201ENST00000265560 TTF1Q15361 905 aaPredicted RBP19.69■□□□□ 0.74
USP4-201ENST00000265560 BLOC1S2Q6QNY1 142 aa19.69■□□□□ 0.74
USP4-201ENST00000265560 ZNF804BA4D1E1 1349 aa19.69■□□□□ 0.74
USP4-201ENST00000265560 STK3Q13188 491 aa19.69■□□□□ 0.74
USP4-201ENST00000265560 KCNB2Q92953 911 aa19.69■□□□□ 0.74
USP4-201ENST00000265560 TNPO1Q92973 898 aaKnown RBP19.69■□□□□ 0.74
USP4-201ENST00000265560 ARMT1Q9H993 441 aa19.69■□□□□ 0.74
USP4-201ENST00000265560 RAI14Q9P0K7 980 aa19.69■□□□□ 0.74
USP4-201ENST00000265560 RFX7Q2KHR2 1363 aa19.69■□□□□ 0.74
USP4-201ENST00000265560 DENND2AQ9ULE3 1009 aa19.68■□□□□ 0.74
USP4-201ENST00000265560 ZFYP08048 801 aaPredicted RBP19.68■□□□□ 0.74
USP4-201ENST00000265560 FOXD4L6Q3SYB3 417 aaPredicted RBP19.68■□□□□ 0.74
USP4-201ENST00000265560 FOXD4L3Q6VB84 417 aaPredicted RBP19.68■□□□□ 0.74
USP4-201ENST00000265560 ADGRA1Q86SQ6 560 aa19.68■□□□□ 0.74
USP4-201ENST00000265560 MYH7P12883 1935 aa19.68■□□□□ 0.74
USP4-201ENST00000265560 PRKAB2O43741 272 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 MAP3K12Q12852 859 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 IL17RAQ96F46 866 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 COL1A1P02452 1464 aaPredicted RBP19.67■□□□□ 0.74
USP4-201ENST00000265560 TCRBV5S4A2TA0A5A2 114 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 MBD4O95243 580 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 CCDC83Q8IWF9 413 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 NEK1Q96PY6 1258 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 INCENPQ9NQS7 918 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 PPFIA3O75145 1194 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 HIBADHP31937 336 aaKnown RBP19.67■□□□□ 0.74
USP4-201ENST00000265560 GPSM2P81274 684 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 LRRFIP1Q32MZ4 808 aaKnown RBP19.67■□□□□ 0.74
USP4-201ENST00000265560 NLGN1Q8N2Q7 840 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 AIDAQ96BJ3 306 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 ZNF219Q9P2Y4 722 aaPredicted RBP19.67■□□□□ 0.74
USP4-201ENST00000265560 TPCN1Q9ULQ1 816 aa19.67■□□□□ 0.74
USP4-201ENST00000265560 DSCC1Q9BVC3 393 aa19.66■□□□□ 0.74
USP4-201ENST00000265560 LIMCH1Q9UPQ0 1083 aa19.66■□□□□ 0.74
USP4-201ENST00000265560 ME3Q16798 604 aa19.66■□□□□ 0.74
USP4-201ENST00000265560 RPAP1Q9BWH6 1393 aaPredicted RBP19.65■□□□□ 0.74
USP4-201ENST00000265560 RPS6KB1P23443 525 aa19.65■□□□□ 0.74
USP4-201ENST00000265560 CAMKK2Q96RR4 588 aa19.65■□□□□ 0.74
USP4-201ENST00000265560 ANKRD2Q9GZV1 360 aa19.65■□□□□ 0.74
USP4-201ENST00000265560 GNL3LQ9NVN8 582 aaKnown RBP19.65■□□□□ 0.74
USP4-201ENST00000265560 PSMA5P28066 241 aa19.65■□□□□ 0.74
USP4-201ENST00000265560 NKX2-3Q8TAU0 364 aa19.65■□□□□ 0.74
USP4-201ENST00000265560 GPHNQ9NQX3 736 aaPredicted RBP19.65■□□□□ 0.74
USP4-201ENST00000265560 CYP7A1P22680 504 aa19.65■□□□□ 0.74
USP4-201ENST00000265560 MCM2P49736 904 aa19.65■□□□□ 0.74
USP4-201ENST00000265560 CRY2Q49AN0 593 aa19.65■□□□□ 0.74
USP4-201ENST00000265560 ZSCAN25Q6NSZ9 544 aa19.65■□□□□ 0.74
USP4-201ENST00000265560 E7EWF7 191 aa19.64■□□□□ 0.73
USP4-201ENST00000265560 FGD1P98174 961 aa19.64■□□□□ 0.73
USP4-201ENST00000265560 FBXO33Q7Z6M2 555 aa19.64■□□□□ 0.73
USP4-201ENST00000265560 LCORLQ8N3X6 602 aa19.64■□□□□ 0.73
USP4-201ENST00000265560 TM6SF1Q9BZW5 370 aa19.64■□□□□ 0.73
USP4-201ENST00000265560 NAP1L2Q9ULW6 460 aaPredicted RBP19.64■□□□□ 0.73
USP4-201ENST00000265560 UFL1O94874 794 aa19.64■□□□□ 0.73
USP4-201ENST00000265560 UBE3CQ15386 1083 aa19.64■□□□□ 0.73
USP4-201ENST00000265560 PARP3Q9Y6F1 533 aa19.64■□□□□ 0.73
USP4-201ENST00000265560 SMIM22K7EJ46 135 aa19.63■□□□□ 0.73
USP4-201ENST00000265560 TOB2Q14106 344 aaPredicted RBP19.63■□□□□ 0.73
USP4-201ENST00000265560 Q6ZUG5 572 aa19.63■□□□□ 0.73
USP4-201ENST00000265560 RBM17Q96I25 401 aaKnown RBP19.63■□□□□ 0.73
USP4-201ENST00000265560 A0A1B0GUL6 1792 aa19.63■□□□□ 0.73
USP4-201ENST00000265560 PRDX5P30044 214 aa19.63■□□□□ 0.73
USP4-201ENST00000265560 SLC15A2Q16348 729 aa19.63■□□□□ 0.73
USP4-201ENST00000265560 ZNF384Q8TF68 577 aa19.63■□□□□ 0.73
USP4-201ENST00000265560 ARAP2Q8WZ64 1704 aa19.63■□□□□ 0.73
USP4-201ENST00000265560 STRBPQ96SI9 672 aaKnown RBP19.63■□□□□ 0.73
USP4-201ENST00000265560 RAB3GAP1Q15042 981 aa19.62■□□□□ 0.73
USP4-201ENST00000265560 RIMBP2O15034 1052 aa19.62■□□□□ 0.73
USP4-201ENST00000265560 CUL4AQ13619 759 aa19.62■□□□□ 0.73
USP4-201ENST00000265560 SDR42E1Q8WUS8 393 aa19.62■□□□□ 0.73
USP4-201ENST00000265560 ZNF622Q969S3 477 aaKnown RBP eCLIP19.62■□□□□ 0.732e-6■■□□□ 13.5
USP4-201ENST00000265560 C6orf229H3BNL8 230 aa19.62■□□□□ 0.73
USP4-201ENST00000265560 DYNLL1P63167 89 aaKnown RBP19.62■□□□□ 0.73
USP4-201ENST00000265560 ST3GAL1Q11201 340 aa19.62■□□□□ 0.73
USP4-201ENST00000265560 BRF1Q92994 677 aa19.62■□□□□ 0.73
USP4-201ENST00000265560 ZDHHC9Q9Y397 364 aa19.62■□□□□ 0.73
USP4-201ENST00000265560 RAB11FIP4Q86YS3 637 aa19.61■□□□□ 0.73
USP4-201ENST00000265560 TNS1Q9HBL0 1735 aaKnown RBP19.61■□□□□ 0.73
USP4-201ENST00000265560 SLC4A8Q2Y0W8 1093 aa19.61■□□□□ 0.73
USP4-201ENST00000265560 POLLQ9UGP5 575 aa19.61■□□□□ 0.73
USP4-201ENST00000265560 GRIK5Q16478 980 aa19.6■□□□□ 0.73
USP4-201ENST00000265560 IMMTQ16891 758 aaKnown RBP19.6■□□□□ 0.73
USP4-201ENST00000265560 EPB41L4AQ9HCS5 686 aaPredicted RBP19.6■□□□□ 0.73
USP4-201ENST00000265560 XDHP47989 1333 aa19.6■□□□□ 0.73
USP4-201ENST00000265560 TSGA10IPQ3SY00 556 aa19.6■□□□□ 0.73
USP4-201ENST00000265560 ZNF213O14771 459 aa19.6■□□□□ 0.73
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms