RNA–Protein interactions for RNA: ENST00000249923.7

COPB1-201, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,481 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-201ENST00000249923 IFFO2Q5TF58 517 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 ZSCAN16Q9H4T2 348 aaPredicted RBP11.88□□□□□ -0.51
COPB1-201ENST00000249923 ASAP1Q9ULH1 1129 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 ZNF165P49910 485 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 CCDC186Q7Z3E2 898 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 PRDM11Q9NQV5 511 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 NOL12Q9UGY1 213 aaKnown RBP eCLIP11.88□□□□□ -0.51
COPB1-201ENST00000249923 V9GYY5 206 aaPredicted RBP11.88□□□□□ -0.51
COPB1-201ENST00000249923 ITGB4P16144 1822 aa11.88□□□□□ -0.51
COPB1-201ENST00000249923 FGAP02671 866 aa11.87□□□□□ -0.51
COPB1-201ENST00000249923 ZAP70P43403 619 aa11.87□□□□□ -0.51
COPB1-201ENST00000249923 HLFQ16534 295 aa11.87□□□□□ -0.51
COPB1-201ENST00000249923 SLC4A9Q96Q91 983 aa11.87□□□□□ -0.51
COPB1-201ENST00000249923 ATG3Q9NT62 314 aa11.87□□□□□ -0.51
COPB1-201ENST00000249923 FGD1P98174 961 aa11.87□□□□□ -0.51
COPB1-201ENST00000249923 MB21D2Q8IYB1 491 aaPredicted RBP11.87□□□□□ -0.51
COPB1-201ENST00000249923 HMGB1P09429 215 aaKnown RBP11.87□□□□□ -0.51
COPB1-201ENST00000249923 TCIRG1Q13488 830 aa11.87□□□□□ -0.51
COPB1-201ENST00000249923 CCAR1Q8IX12 1150 aaKnown RBP11.87□□□□□ -0.51
COPB1-201ENST00000249923 DHX40Q8IX18 779 aaKnown RBP11.87□□□□□ -0.51
COPB1-201ENST00000249923 FBXL16Q8N461 479 aa11.87□□□□□ -0.51
COPB1-201ENST00000249923 NHSL1Q5SYE7 1610 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 KIF28PB7ZC32 967 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 CSF1RP07333 972 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 MCAMP43121 646 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 PPIL4Q8WUA2 492 aaKnown RBP eCLIP11.86□□□□□ -0.51
COPB1-201ENST00000249923 CACTINQ8WUQ7 758 aaKnown RBP11.86□□□□□ -0.51
COPB1-201ENST00000249923 ZNF274Q96GC6 653 aaPredicted RBP11.86□□□□□ -0.51
COPB1-201ENST00000249923 C16orf45Q96MC5 204 aaPredicted RBP11.86□□□□□ -0.51
COPB1-201ENST00000249923 SOS2Q07890 1332 aaPredicted RBP11.86□□□□□ -0.51
COPB1-201ENST00000249923 ERICH4A6NGS2 130 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 IL2RBP14784 551 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 HMGN5P82970 282 aaKnown RBP11.86□□□□□ -0.51
COPB1-201ENST00000249923 ZSCAN25Q6NSZ9 544 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 DNAJC10Q8IXB1 793 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 MAP7D2Q96T17 732 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 SENP2Q9HC62 589 aa11.86□□□□□ -0.51
COPB1-201ENST00000249923 CGNQ9P2M7 1197 aaKnown RBP11.85□□□□□ -0.51
COPB1-201ENST00000249923 PCDHA7Q9UN72 937 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 ZNF330Q9Y3S2 320 aaPredicted RBP11.85□□□□□ -0.51
COPB1-201ENST00000249923 KIF3AQ9Y496 699 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 VGLL2Q8N8G2 317 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 PIGBQ92521 554 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 CLIC4Q9Y696 253 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 PRIMPOLQ96LW4 560 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 GREM2Q9H772 168 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 CFAP45Q9UL16 551 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 RIPOR2Q9Y4F9 1068 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 MYH3P11055 1940 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 LRP6O75581 1613 aa11.85□□□□□ -0.51
COPB1-201ENST00000249923 FMR1NBQ8N0W7 255 aaPredicted RBP11.84□□□□□ -0.51
COPB1-201ENST00000249923 PDCL2Q8N4E4 241 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 CARD10Q9BWT7 1032 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 TACC3Q9Y6A5 838 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 COL4A1P02462 1669 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 ANKRD36CQ5JPF3 1778 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 UBE2Q2LH0YL09 131 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 RIOK3O14730 519 aaKnown RBP11.84□□□□□ -0.51
COPB1-201ENST00000249923 AIFM3Q96NN9 605 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 STRN4Q9NRL3 753 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 U2AF2P26368 475 aaKnown RBP eCLIP11.84□□□□□ -0.511e-6■■□□□ 13.2
COPB1-201ENST00000249923 TBC1D10CQ8IV04 446 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 TRIM5Q9C035 493 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 CEP126Q9P2H0 1117 aa11.84□□□□□ -0.51
COPB1-201ENST00000249923 USP27XA6NNY8 438 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 NDUFA8P51970 172 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 TRIM28Q13263 835 aaKnown RBP11.83□□□□□ -0.52
COPB1-201ENST00000249923 CCDC57Q2TAC2 916 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 PLA2G12BQ9BX93 195 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 BCL2L12Q9HB09 334 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 MROH7-TTC4A0A0A0MT08 1334 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 NUP98P52948 1817 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 A0A1B0GVL5 298 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 GPAA1O43292 621 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 PRC1O43663 620 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 PCCAP05165 728 aaPredicted RBP11.83□□□□□ -0.52
COPB1-201ENST00000249923 GPTP24298 496 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 LINC00301Q8NCQ3 95 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 INCENPQ9NQS7 918 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 LRP5O75197 1615 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 STRCQ7RTU9 1775 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 FAM160A1Q05DH4 1040 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 TTC39AQ5SRH9 613 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 CYB5R4Q7L1T6 521 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 ZBTB38Q8NAP3 1195 aaPredicted RBP11.83□□□□□ -0.52
COPB1-201ENST00000249923 TTLL11Q8NHH1 800 aa11.83□□□□□ -0.52
COPB1-201ENST00000249923 PIH1D3Q9NQM4 214 aaKnown RBP11.83□□□□□ -0.52
COPB1-201ENST00000249923 POLR3DP05423 398 aaPredicted RBP11.82□□□□□ -0.52
COPB1-201ENST00000249923 WASHC4Q2M389 1173 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 NBPF11Q86T75 865 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 TICAM2Q86XR7 235 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 KLF18A0A0U1RQI7 1052 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 SNAP23O00161 211 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 SARM1Q6SZW1 724 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 FSIP1Q8NA03 581 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 RTEL1Q9NZ71 1219 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 CLIP2Q9UDT6 1046 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 ATRNO75882 1429 aa11.82□□□□□ -0.52
COPB1-201ENST00000249923 VGLL3A8MV65 326 aa11.81□□□□□ -0.52
COPB1-201ENST00000249923 NLRP10Q86W26 655 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms