RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 ZNF330Q9Y3S2 320 aaPredicted RBP21.86■■□□□ 1.09
CPSF3-201ENST00000238112 UBR2Q8IWV8 1755 aa21.86■■□□□ 1.09
CPSF3-201ENST00000238112 CEP57L1Q8IYX8 460 aa21.86■■□□□ 1.09
CPSF3-201ENST00000238112 C8orf76Q96K31 380 aa21.86■■□□□ 1.09
CPSF3-201ENST00000238112 PRC1O43663 620 aa21.85■■□□□ 1.09
CPSF3-201ENST00000238112 TCIRG1Q13488 830 aa21.85■■□□□ 1.09
CPSF3-201ENST00000238112 NAT10Q9H0A0 1025 aaKnown RBP21.85■■□□□ 1.09
CPSF3-201ENST00000238112 GPHNQ9NQX3 736 aaPredicted RBP21.85■■□□□ 1.09
CPSF3-201ENST00000238112 PCDHA7Q9UN72 937 aa21.85■■□□□ 1.09
CPSF3-201ENST00000238112 GOLGA8BA8MQT2 603 aa21.85■■□□□ 1.09
CPSF3-201ENST00000238112 NKX1-1Q15270 411 aaPredicted RBP21.85■■□□□ 1.09
CPSF3-201ENST00000238112 SF3A1Q15459 793 aaKnown RBP21.85■■□□□ 1.09
CPSF3-201ENST00000238112 KLF18A0A0U1RQI7 1052 aa21.84■■□□□ 1.09
CPSF3-201ENST00000238112 NEMFO60524 1076 aa21.84■■□□□ 1.09
CPSF3-201ENST00000238112 FGAP02671 866 aa21.84■■□□□ 1.09
CPSF3-201ENST00000238112 ADALQ6DHV7 355 aa21.84■■□□□ 1.09
CPSF3-201ENST00000238112 RALYLQ86SE5 291 aaKnown RBP21.84■■□□□ 1.09
CPSF3-201ENST00000238112 APPBP2Q92624 585 aa21.84■■□□□ 1.09
CPSF3-201ENST00000238112 SDF4Q9BRK5 362 aa21.84■■□□□ 1.09
CPSF3-201ENST00000238112 TNNT1P13805 278 aa21.84■■□□□ 1.09
CPSF3-201ENST00000238112 STK38Q15208 465 aa21.84■■□□□ 1.09
CPSF3-201ENST00000238112 TPD52L1Q16890 204 aaPredicted RBP21.84■■□□□ 1.09
CPSF3-201ENST00000238112 DHX40Q8IX18 779 aaKnown RBP21.84■■□□□ 1.09
CPSF3-201ENST00000238112 CCDC85AQ96PX6 553 aaPredicted RBP21.84■■□□□ 1.09
CPSF3-201ENST00000238112 A0A1W2PQ27 194 aa21.83■■□□□ 1.09
CPSF3-201ENST00000238112 A0A1W2PQ64 194 aa21.83■■□□□ 1.09
CPSF3-201ENST00000238112 A0A1W2PQD8 194 aa21.83■■□□□ 1.09
CPSF3-201ENST00000238112 CPLX1O14810 134 aa21.83■■□□□ 1.09
CPSF3-201ENST00000238112 FOXP2O15409 715 aa21.83■■□□□ 1.09
CPSF3-201ENST00000238112 IL2RBP14784 551 aa21.83■■□□□ 1.09
CPSF3-201ENST00000238112 LRRC8AQ8IWT6 810 aa21.83■■□□□ 1.09
CPSF3-201ENST00000238112 FMR1NBQ8N0W7 255 aaPredicted RBP21.83■■□□□ 1.09
CPSF3-201ENST00000238112 NCOA7Q8NI08 942 aa21.83■■□□□ 1.09
CPSF3-201ENST00000238112 KCNG4Q8TDN1 519 aa21.83■■□□□ 1.09
CPSF3-201ENST00000238112 CTIFO43310 598 aaKnown RBP21.83■■□□□ 1.08
CPSF3-201ENST00000238112 ZAP70P43403 619 aa21.83■■□□□ 1.08
CPSF3-201ENST00000238112 IFIT5Q13325 482 aaKnown RBP21.83■■□□□ 1.08
CPSF3-201ENST00000238112 ZRSR1Q15695 479 aaKnown RBP21.83■■□□□ 1.08
CPSF3-201ENST00000238112 OTUD7BQ6GQQ9 843 aa21.83■■□□□ 1.08
CPSF3-201ENST00000238112 ORC3Q9UBD5 711 aaPredicted RBP21.83■■□□□ 1.08
CPSF3-201ENST00000238112 A0A087WWV3 80 aa21.82■■□□□ 1.08
CPSF3-201ENST00000238112 SCARF1Q14162 830 aa21.82■■□□□ 1.08
CPSF3-201ENST00000238112 HSP90AB3PQ58FF7 597 aa21.82■■□□□ 1.08
CPSF3-201ENST00000238112 MB21D2Q8IYB1 491 aaPredicted RBP21.82■■□□□ 1.08
CPSF3-201ENST00000238112 LINC00301Q8NCQ3 95 aa21.82■■□□□ 1.08
CPSF3-201ENST00000238112 A0A1B0GVL5 298 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 SMTNL1A8MU46 457 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 ZNF213O14771 459 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 POLR3DP05423 398 aaPredicted RBP21.81■■□□□ 1.08
CPSF3-201ENST00000238112 TNS2Q63HR2 1409 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 KIF6Q6ZMV9 814 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 PUS7LQ9H0K6 701 aaKnown RBP21.81■■□□□ 1.08
CPSF3-201ENST00000238112 ABCC12Q96J65 1359 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 PCCAP05165 728 aaPredicted RBP21.81■■□□□ 1.08
CPSF3-201ENST00000238112 BRAPQ7Z569 592 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 AOPEPQ8N6M6 819 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 FBXO18Q8NFZ0 1043 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 ERCC4Q92889 916 aaPredicted RBP21.81■■□□□ 1.08
CPSF3-201ENST00000238112 FAM89AQ96GI7 184 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 POLR3EQ9NVU0 708 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 CLIC4Q9Y696 253 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 PAPPAQ13219 1627 aa21.81■■□□□ 1.08
CPSF3-201ENST00000238112 YEATS4O95619 227 aa21.8■■□□□ 1.08
CPSF3-201ENST00000238112 TRIM28Q13263 835 aaKnown RBP21.8■■□□□ 1.08
CPSF3-201ENST00000238112 PDCL2Q8N4E4 241 aa21.8■■□□□ 1.08
CPSF3-201ENST00000238112 FBXW7Q969H0 707 aa21.8■■□□□ 1.08
CPSF3-201ENST00000238112 PAXBP1Q9Y5B6 917 aa21.8■■□□□ 1.08
CPSF3-201ENST00000238112 GPAA1O43292 621 aa21.8■■□□□ 1.08
CPSF3-201ENST00000238112 NDUFA8P51970 172 aa21.8■■□□□ 1.08
CPSF3-201ENST00000238112 DDX24Q9GZR7 859 aaKnown RBP eCLIP21.8■■□□□ 1.08
CPSF3-201ENST00000238112 HPS5Q9UPZ3 1129 aa21.8■■□□□ 1.08
CPSF3-201ENST00000238112 SPTLC2O15270 562 aa21.79■■□□□ 1.08
CPSF3-201ENST00000238112 SYNE3Q6ZMZ3 975 aa21.79■■□□□ 1.08
CPSF3-201ENST00000238112 PLA2G12BQ9BX93 195 aa21.79■■□□□ 1.08
CPSF3-201ENST00000238112 ANTXR2P58335 489 aa21.79■■□□□ 1.08
CPSF3-201ENST00000238112 ATP2B3Q16720 1220 aa21.79■■□□□ 1.08
CPSF3-201ENST00000238112 PPP4R3BQ5MIZ7 849 aa21.79■■□□□ 1.08
CPSF3-201ENST00000238112 MYSM1Q5VVJ2 828 aa21.79■■□□□ 1.08
CPSF3-201ENST00000238112 FILIP1Q7Z7B0 1213 aa21.79■■□□□ 1.08
CPSF3-201ENST00000238112 RAB11FIP4Q86YS3 637 aa21.79■■□□□ 1.08
CPSF3-201ENST00000238112 ZBTB38Q8NAP3 1195 aaPredicted RBP21.79■■□□□ 1.08
CPSF3-201ENST00000238112 NWD2Q9ULI1 1742 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 TRDNQ13061 729 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 METTL24Q5JXM2 366 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 PI16Q6UXB8 463 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 ANKRD7Q92527 254 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 TMOD3Q9NYL9 352 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 COL5A2P05997 1499 aaPredicted RBP21.78■■□□□ 1.08
CPSF3-201ENST00000238112 WDR19Q8NEZ3 1342 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 CSF1RP07333 972 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 SKILP12757 684 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 RBM6P78332 1123 aaKnown RBP21.78■■□□□ 1.08
CPSF3-201ENST00000238112 ARID5BQ14865 1188 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 CARD10Q9BWT7 1032 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 KIAA1468Q9P260 1216 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 STRCP1A6NGW2 1772 aa21.78■■□□□ 1.08
CPSF3-201ENST00000238112 CCDC112Q8NEF3 446 aa21.77■■□□□ 1.08
CPSF3-201ENST00000238112 CCDC69A6NI79 296 aa21.77■■□□□ 1.07
CPSF3-201ENST00000238112 SMAP1Q8IYB5 467 aaPredicted RBP21.77■■□□□ 1.07
CPSF3-201ENST00000238112 CEP135Q66GS9 1140 aa21.76■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms